Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01716 ATGTCAAATTTAGTTGAATCCTTCATCAAAGAAAGAAAGTATCCATTCATTTTCACCTTTTCTGCCTTACTTATTTGGTTCATGATCCTTCTCTACGCCAACACCACCACCTTCACAACCTCTGATCCAAAAGCCTTCTACCCTGATGTAAAAGTGCAGCAACCGCTCGTCCAACAACAACATGCCCCTCCACCTCCACTAGTCCAAGATTCAAAAGATCGTCAAGAACTGCCACCAAAGCGACATGAAGGACTGCTCCATTGGGAAAAGGCATTTGATACTAATAATTTTTCTGTTGATTGGAAGCGTTGTAAGGGTGTTCTCGCGGCAGATTATATACCATGTTTGGATAATATGAAGGTTATTAAGGCTTTAAGGACAAGGAGGCACATGGAGCATAGGGAAAGACATTGTCCTAACTCTATTCGATGTTTGTTACCTCTTCCCAAAGGGTATAAAGTCCCGGTTGCATGGCCTAAGAGTAGGGACATGATTTGGTATGATAATGTACCTCATCCAAAACTTGTTGAATACAAGAAGGAGCAAAATTGGGTGGTGAAGTCGGGCGAATATCTTGTATTTCCAGGAGGTGGTACTCAATTCAAAGACGGAGTTAACCATTATACCGATTTCATACAGAAGACACTACCAACAATCCAATGGGGAAAGAATATCAGGGTTGTGCTTGATGCTGGTTGTGGAGTTGCTAGCTTTGGCGGCTATCTTCTCGACAAGAATGTCATTACCATGTCATTTGCACCAAAGGATGAACATGAAGCTCAGATACAATTCGCTTTGGAACGAGGAATTCCAGCTACACTTTCTGTCATCGGAACACAAAAATTGACGTTTCCTGATAATGGATTCGATTTGATTCATTGCGCGCGTTGTAGGGTGCACTGGGACGCTGATGGTGGGAAGCCATTATATGAACTCAATAGGATTCTTAGGCCTGGTGGTTTCTTTGCATGGTCAGCTACACCAGTTTATCGCGACGATGAAAGAGATCAGAAAGTATGGAATGCTATGGTTAGAGTAACAACAGAAATGTGTTGGACAGTTGTGGCCAAGACTTTCGACTCATCTGGAATCGGACTTGTTATATACCAGAAGCCGACCTCATCTTCCTGCTACGAGAAACGCAAAAAGAACAATCCTCCCATATGTAAAAGTAGCGATATAAAACAAATTTCATGGTATACCAAATTGAGTAGTTGCCTTATTCCTATTCCCGTGAACGTGGACTTGTTCGACAAGGATACTAAACACTGGTCTAGAATAGTTTCAGACATTTATATGGAAGCTCCTATAAATTGGTCAAGTGTTCGAAATGTAATGGACATGAATGCTGGTTATGGAGGATTTGCTGCAGCTCTTATTGATCTACCAATTTGGGGACTCTATCATGATTGGTGTGAATCCTTGAATACGTATCCTCGTACGTATGATCTTCTTCATTCAAGCTTTTTCTTCAAAAACTTTAATCAAAGATGTGACATTGTAGATGTGGTTGTGGAGATAGATCGCATATTGAGACCAGATGGATATGTTTTAGTACAAGACTCAATGGAAGCAATTAGAAAATTGGGTTCAATATTGCATTCACTTCATTGGTCTGTAACATTGTATCAGAATCAGTTTCTTGTTGGTAGGAAGAGCTTTTGGCGTCCCAAAGCCATAGAAACTGAATGA 1692 0.4084 MSNLVESFIKERKYPFIFTFSALLIWFMILLYANTTTFTTSDPKAFYPDVKVQQPLVQQQHAPPPPLVQDSKDRQELPPKRHEGLLHWEKAFDTNNFSVDWKRCKGVLAADYIPCLDNMKVIKALRTRRHMEHRERHCPNSIRCLLPLPKGYKVPVAWPKSRDMIWYDNVPHPKLVEYKKEQNWVVKSGEYLVFPGGGTQFKDGVNHYTDFIQKTLPTIQWGKNIRVVLDAGCGVASFGGYLLDKNVITMSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPLYELNRILRPGGFFAWSATPVYRDDERDQKVWNAMVRVTTEMCWTVVAKTFDSSGIGLVIYQKPTSSSCYEKRKKNNPPICKSSDIKQISWYTKLSSCLIPIPVNVDLFDKDTKHWSRIVSDIYMEAPINWSSVRNVMDMNAGYGGFAAALIDLPIWGLYHDWCESLNTYPRTYDLLHSSFFFKNFNQRCDIVDVVVEIDRILRPDGYVLVQDSMEAIRKLGSILHSLHWSVTLYQNQFLVGRKSFWRPKAIETE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01716 563 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 465 546 IPR004159 GO:0008168
Vifa2g01716 563 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 111 413 IPR004159 GO:0008168
Vifa2g01716 563 Gene3D Vaccinia Virus protein VP39 201 401 IPR029063 -
Vifa2g01716 563 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 344 IPR029063 -
Vifa2g01716 563 CDD AdoMet_MTases 228 322 - -
Vifa2g01716 563 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 72 413 IPR004159 GO:0008168
Vifa2g01716 563 FunFam probable methyltransferase PMT23 200 383 - -
Vifa2g01716 563 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 414 523 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01716 Vifa-Chr2 444201847 444204392 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01716 - - mtr:11406774 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01716 2 444201847 444204392 Vifa2g01716 2 444201847 444204392 ECH
Vifa2g01716 2 444201847 444204392 Vifa1g02253 1 362158021 362161027 PCT