Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02253 ATGGCAATTCCAGTTGAACACTTCTTCAAGCAAAAGAAATACCCATTCATTCTATCTCTTTCTATCTTACTCATCTCCGTCACACTCTTCCTCATCACCACCGACATCACCACCACTTTCAACCCTTTTGTTATTTACTCTGATCTCAAACACCAACCTCAACCACCACCACCACTCAACCCTGCAGAATCAGATTCCATTACAATTTCAAAACAAGAAAAGCTACCACCAAAGGAACAAGAGCCTCTTGTTAGTGGTGGTAATAATAGTAACGTGGGTATTTATTGGAAGCTTTGTAAGGAAAGTGTGACGGTTGATTATATACCTTGTTTGGATAATTATAAAGCGATTAAGGATTTGAAGTCGAGGAGACACATGGAGCATAGAGAAAGACATTGTCCTGAAACTAGTCTCAACTGTTTGTTGCCTATTCCCAAAGGTTATAAAAAACCAGTTCGTTGGCCTAAGAGCAGGGACATGATTTGGTATGATAATGTTCCTTATTCAAAGCTAGTTGAGTACAAGAAAGACCAACACTGGGTTGTGAAATCGGGTGAATATCTCAAATTTCCAGGAGGTGGTACTCAATTCAAAGACGGAGTTGATCATTATATTGATTTCATAGAGAAGGCATTAGCGAAAATTCAATGGGGGAAGCATGTTAGGGTTGTTCTTGATGTTGGTTGCGGCGTTGCTAGCTTTGGTGGCTATCTGTTAGACAAAAATGTTATTACCATGTCATTTGCCCCGAAAGATGAACATGAAGCTCAGATACAATTTGCCTTGGAGCGGGGAATTCCCGCTACTCTTTCGGTTATTGGAACACAAAAGTTGACTTTTCCTGACAATGGTTTCGATTTGATACATTGTGCACGATGCAGAGTTCATTGGGATGCAGATGGTGGTAAACCGTTATACGAACTTAATAGGATTCTTAGACCCGGCGGTTACTTTGCATGGTCTGCAACACCAGTTTATCGCGATGATGATCGAGATCAGAAAGTATGGAAAGCCATGGTGGCTATAACAAAAGCTTTGTGCTGGAAGGTTGTGGCTAAGGCCGACGATTCATCTGGAATTGGACTTGTTATATACCAGAAGCCTACTTCATCTTCTTGCTATAAGAAACGTAAAGAGAACAATCCACCTATATGTGAAAACGTGGATGGGAAAAATAGCTCATGGTACTCCCGACTCAATAGCTGCCTTACCCCTCTTCCGGTTGATGGTAAGGGTAAAGCGCTGAGCTGGCCCACGCCTTGGCCTCAGAGACTTACAAGTAAGCCCCCTAGCTTACGTCACGATTCAGATGCCATTGATGAGTTCAACAAGGATAGCAAGCACTGGTCTCAACTAGTGTCAGATGTTTATGACAATGGTCTTTCGATAAGCTGGTCAAGTGTTCGGAATGTAATGGACATGAATGCTGGTTATGCCGGATTTGCAGCAGCACTCGTTGATCGGCCCATCTGGGTGATGAATGTAGTGCCCATTGATGTGCCGGATACACTTTCTATTATATTGGACCGAGGATTAATAGGAACGTATCATGATTGGTGTGAGTCCTTTAATACATATCCGCGCACATATGACCTCCTTCATGCTAGCTTTCTTTTCAAACATCTTGACCAAAGATGTGACCTTGTAGATGTGGTTGTGGAGATAGATCGCATATTGAGACCAGATGGGCATCTTGTGATTCATGATTCCATGGAAATGCTTAGCAAACTTAGTGCAATCTTGCGCTCACTTCACTGGTCTGTAACTTTGCATCAAAATCACTTTATTGCAGGTAGGAAAAGTTTTTGGCGTCCCACAAGTTTATGA 1827 0.4215 MAIPVEHFFKQKKYPFILSLSILLISVTLFLITTDITTTFNPFVIYSDLKHQPQPPPPLNPAESDSITISKQEKLPPKEQEPLVSGGNNSNVGIYWKLCKESVTVDYIPCLDNYKAIKDLKSRRHMEHRERHCPETSLNCLLPIPKGYKKPVRWPKSRDMIWYDNVPYSKLVEYKKDQHWVVKSGEYLKFPGGGTQFKDGVDHYIDFIEKALAKIQWGKHVRVVLDVGCGVASFGGYLLDKNVITMSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPLYELNRILRPGGYFAWSATPVYRDDDRDQKVWKAMVAITKALCWKVVAKADDSSGIGLVIYQKPTSSSCYKKRKENNPPICENVDGKNSSWYSRLNSCLTPLPVDGKGKALSWPTPWPQRLTSKPPSLRHDSDAIDEFNKDSKHWSQLVSDVYDNGLSISWSSVRNVMDMNAGYAGFAAALVDRPIWVMNVVPIDVPDTLSIILDRGLIGTYHDWCESFNTYPRTYDLLHASFLFKHLDQRCDLVDVVVEIDRILRPDGHLVIHDSMEMLSKLSAILRSLHWSVTLHQNHFIAGRKSFWRPTSL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02253 608 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 79 604 IPR004159 GO:0008168
Vifa1g02253 608 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 106 593 IPR004159 GO:0008168
Vifa1g02253 608 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 451 584 IPR029063 -
Vifa1g02253 608 Gene3D Vaccinia Virus protein VP39 174 351 IPR029063 -
Vifa1g02253 608 FunFam probable methyltransferase PMT23 196 379 - -
Vifa1g02253 608 CDD AdoMet_MTases 224 318 - -
Vifa1g02253 608 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 329 IPR029063 -
Vifa1g02253 608 Gene3D Vaccinia Virus protein VP39 428 600 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02253 Vifa-Chr1 362158021 362161027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02253 - - tpra:123924111 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02253 1 362158021 362161027 Vifa1g02253 1 362158021 362161027 ECH
Vifa2g01716 2 444201847 444204392 Vifa1g02253 1 362158021 362161027 PCT