Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01712 ATGGAAAACCATCTTCCATCTCCTCCAAACCCTAACAATGCCCAATGCCCCACCGAAGAAAACGACGACGACATCGACGAACAAGAAGACGAAGACGATGAGGAAGACGAAGACTACATCGATTCCGACTCACCGACTCCCCGAATCCCCCAATCCCCAATCGCCCGTTTGCGAGAGCAGAAATTCAAGCTTGAAACCCTCTCCCGGCGACTCTCATCGGAACTAGTCCCTATCCGAGTCCACGACGTCATAATTCGCGGCAACACGACCACCAAGGACTGGGTGATCGAAGCGGAACTGAAGGGAATCGAGGATGTTACCACTGTGCAGGAACTCATTCGCGCCTCGGAAATCGCACTCACTAGGCTTCAGAGCCTTGGGGTTTTTGATTCTACTAAGGTTAGTCTTGAGCCTGGACCGCTGGAGTTGCCTAACACTGCCAATGTCGTTGTCAACATCGTGGAGGCTGTTAACAAAATCTCTGGTGAATTTGGTGTTTATACCAAACCCTCGACCAGTTCTTGGACTGCTGAAGGTACTCTTAAGTACAAAAACCCGTTAGGTTATGGTGATCTATGGGATGCTTCTTTGGCTTATGGTGTCAACCAAGCAGCAGAGGTAAGTGTGGGGTTATATGTCCCTCGACTTAAAGCAACTTCAACTCCCATTGCCGCACGTTTGTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCGTACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATCTCAACAAAGCACCATGATTTGGCATACACTCTTGGATGGCGTACCTTAACAGATCCATTGCAAATGTCATCCAGGTCTGTAAGGAGGCAGCTCGGCCATGGTTTGTTATCCTCTCTGAAGTATACATTTAAAATTGATAGGAGAAACTCACCAATTAGGCCAACAAAAGGACATGCTTTTGTTTCTACCACTCACCTTGGCGGCCTTACACCAGATCATCGTAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGGTATGCTATTCCCTTTGGATTTTATAATACAGCACTGAACCTAGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGACATGATTTCAGGAACAAGCCATCTCCCCTTCCTGAAAGATTTTGTTTGGGTGGTGATTTCTCTCCAATTTGCACCCTAGGAGGGCCAATGACATTATGGGGATTTAAAACTAGGGGATTAGGTCCTGCTGAACTACGAAGACAAAGCAGAGATGTATTCAATGATGACAATAATGATTCCTCTAAGTGGGACTTCGTTGGAGGAGATCTTGCTGTTACAGCTTTTGCAGATCTCTCTTTTGATCTTCCGATTAGGTGGTTAAGAGAACATGGGGTTCATGGCCATGTTTTTGCTGGTGCCGGGAATACTGCTAAATTAACTCAGAATGAATATAAGTACTTCTCTCCTCAGAGGTTCTTAGAATCCTTCCGAACATCAGTCGGATGTGGAATTGTTGTTCCTACTAGTCTTTTCCGCCTAGAGGCTAACTACTACTACATACTCAGGCAGAATGAACATGACCGTGGTAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG 1596 0.4612 MENHLPSPPNPNNAQCPTEENDDDIDEQEDEDDEEDEDYIDSDSPTPRIPQSPIARLREQKFKLETLSRRLSSELVPIRVHDVIIRGNTTTKDWVIEAELKGIEDVTTVQELIRASEIALTRLQSLGVFDSTKVSLEPGPLELPNTANVVVNIVEAVNKISGEFGVYTKPSTSSWTAEGTLKYKNPLGYGDLWDASLAYGVNQAAEVSVGLYVPRLKATSTPIAARLSMLSQDWQEFSSYKEQLLGMSLGLISTKHHDLAYTLGWRTLTDPLQMSSRSVRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGHAFVSTTHLGGLTPDHRSLRFLRQEFDVRYAIPFGFYNTALNLGISAGAVFPWGHDFRNKPSPLPERFCLGGDFSPICTLGGPMTLWGFKTRGLGPAELRRQSRDVFNDDNNDSSKWDFVGGDLAVTAFADLSFDLPIRWLREHGVHGHVFAGAGNTAKLTQNEYKYFSPQRFLESFRTSVGCGIVVPTSLFRLEANYYYILRQNEHDRGKTGFRFSFSAPS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01712 531 MobiDBLite consensus disorder prediction 1 53 - -
Vifa2g01712 531 Gene3D membrane protein fhac 77 156 - -
Vifa2g01712 531 Pfam Surface antigen variable number repeat 78 155 IPR010827 GO:0019867
Vifa2g01712 531 ProSiteProfiles POTRA domain profile. 78 156 IPR034746 -
Vifa2g01712 531 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 167 529 - -
Vifa2g01712 531 FunFam Outer membrane OMP85 family protein 167 529 - -
Vifa2g01712 531 FunFam Outer membrane OMP85 family protein 77 156 - -
Vifa2g01712 531 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g01712 531 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 18 528 IPR039910 -
Vifa2g01712 531 MobiDBLite consensus disorder prediction 19 41 - -
Vifa2g01712 531 Pfam Omp85 superfamily domain 185 528 IPR000184 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01712 Vifa-Chr2 443138969 443142622 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01712 K07277 - gmx:100785408 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01712 2 443138969 443142622 Vifa2g01712 2 443138969 443142622 ECH
Vifa2g01712 2 443138969 443142622 Vifa1g02240 1 360372980 360385096 PCT