Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02240 ATGGAAACTACACAACAAGAACCCTCTCCTTCCAACACTCACACTCCAAACTCCACCAACACCGACCCTCAAAATAACAACAACAACAACCACATCGACGACGAAGAAGATGAAGACGAAGAAGAAGAATACGACGAAGACGACGACGACGAACCGAATCACCAAATTCCCCAATCCGCAGAATCCAAATTACGCGAGCAACGTTTCAAAGTACAAGCCTTTTCCCGTCGATTAACAACCGAACTAGTCCCAATCCGAGTCCACGACGTGATAATAAACGGAAACACGAAGACGAAGGATTGGATAATCGAAGCCGAACTCAATGGAATCGAGAAAGCCACTACAATGCAGGAACTTATGCAAGCTTCGCAAATCGCTATTTCAAGGCTTCAAGGGCTTGAAATCTTTGATTCTTGCAATGTTAAACTCGAAGCTGGACCTCGAGAATTGCCAGGCACTGCTAATGTTATCGTCGATGTTGTTGAGACCGATAGCAAACTTTCTGGTGGATTTGGCGTTTATATGAAACCCTCGGTTAATACATGGACTTCTGAAGGAACTCTTAAGTATAAGAATATTTTTGGTTATGGTGATATATGGGATGCTTCTTTAGCCTATGGTGGCAGCCAAGCGACAGAGGTGAGTTTAGGAGTGTATGCCCCTCGCCTCAGAGGGTTTTTAACTCCTCTTGTGGCACGGATGTTCATGCTTTCTCAAGACTGGCAGGAGTTTTCTTCGTATAAAGAGCAGCTGTTAGGCATGTCTCTTGACTTGATATCGACAAAGCACCAGGACTTAGTATACACTCTTGGATGGCGTAGCTTAACTGATCCTTTACAAATGGCATCAAAATCTGTAAGGAGACAGCTGGGCCATGGGTTACTCTCGTCTTTGAAGTATACGTTAAAGTTTGATAGAAGAGATTCGCCTATTAGGCCTACAAAAGGATATGCTTTTGTTTCCACCACTCACTTTGGTGGTCTTACACCGGATCACCGGAGCTCGCGGTTTTTGCGCCAGGAGTTTGATGCTCGCCTTGCTGTTCCTTTTGGATTTTATAATACAGCACTGAACCTTGGCATATCTGCTGGGGCTGTGTTTCCATGGGGGCAAGGGTTCAGGACCAAGTCATCTCCCCTTCCCGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGACCAACAACATTATGGGGATTTAAAACTAGAGGAGTAGGCCCTACTGAACTGCGGAGGCAAAGAAGAGATGAATCAAATGATGACAGTGGTGGTTTGTCTACGCGTGACTTCATTGGAGGAGATCTTGCTGTTACTGCCTTTGCAGACGTCTCTTTTGACCTTCCTATTAGGTGGTTGAGAGAGCAAGGAATACATGCACACGTTTTTGCTGGTACTGGGAATGCTGCTAAGCTAACTCAGGGCGAATACATGCATTTTTCTCCTCGGAAGTTCTTAGATTCCTTTCGGCTGTCTGTCGGATGTGGAATTGTTATTCCTACTAGACTCTTCCGCTTGGAGGTTAACCACTTGCACATTCTTAGGAAGGATGAGCATGATCGTGGGAAGACTGGATTTAAGTTCAGCTTCTCAGCTCCTATGTAG 1617 0.4521 METTQQEPSPSNTHTPNSTNTDPQNNNNNNHIDDEEDEDEEEEYDEDDDDEPNHQIPQSAESKLREQRFKVQAFSRRLTTELVPIRVHDVIINGNTKTKDWIIEAELNGIEKATTMQELMQASQIAISRLQGLEIFDSCNVKLEAGPRELPGTANVIVDVVETDSKLSGGFGVYMKPSVNTWTSEGTLKYKNIFGYGDIWDASLAYGGSQATEVSLGVYAPRLRGFLTPLVARMFMLSQDWQEFSSYKEQLLGMSLDLISTKHQDLVYTLGWRSLTDPLQMASKSVRRQLGHGLLSSLKYTLKFDRRDSPIRPTKGYAFVSTTHFGGLTPDHRSSRFLRQEFDARLAVPFGFYNTALNLGISAGAVFPWGQGFRTKSSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGVGPTELRRQRRDESNDDSGGLSTRDFIGGDLAVTAFADVSFDLPIRWLREQGIHAHVFAGTGNAAKLTQGEYMHFSPRKFLDSFRLSVGCGIVIPTRLFRLEVNHLHILRKDEHDRGKTGFKFSFSAPM 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02240 538 FunFam Outer membrane OMP85 family protein 84 163 - -
Vifa1g02240 538 Gene3D membrane protein fhac 84 163 - -
Vifa1g02240 538 FunFam Outer membrane OMP85 family protein 174 536 - -
Vifa1g02240 538 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 175 536 - -
Vifa1g02240 538 MobiDBLite consensus disorder prediction 1 66 - -
Vifa1g02240 538 Pfam Omp85 superfamily domain 192 535 IPR000184 GO:0019867
Vifa1g02240 538 MobiDBLite consensus disorder prediction 1 28 - -
Vifa1g02240 538 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 30 534 IPR039910 -
Vifa1g02240 538 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02240 Vifa-Chr1 360372980 360385096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02240 K07277 - gmx:100802876 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02240 1 360372980 360385096 Vifa1g02240 1 360372980 360385096 ECH
Vifa2g01712 2 443138969 443142622 Vifa1g02240 1 360372980 360385096 PCT