Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01684 ATGACTTCCAAACAGAAACAGACTTACAACGTTTGTTTTTGCTGCCGGCGCCGGTTCAAGCTCGCCATATCGGAAGCACCACCGGCGATAAAGGAACTCTATCACAAATACTCCGATGAGAACGCCATCATGACCGCATCTCACCTTCAAAGGTTCCTCATCGAGGTTCAGGGAGATGACAACGTCACAGAGAATGAAGCACAATCCATCATCGACGGTCATAAGCATTTGAGTATCTTTCATCGACGAGGTCTCAATCTCGAGAGCTTCTTCAAGTTTCTCTTCAGTGATAATAACCCTCCTCTATTACCTTCTCGCGGGGTGCATCAGGATATGACTTTACCGTTGTCTCATTATTACATACACACTGGTCATAATTCCTATCTAACTGGAAATCAGCTTAGTAGTGACTGCAGTGACGCGCCTATCATCGTTGCGCTTCAGAGAGGTGTAAGGGTTATTGAATTGGATATATGGCCTAATGGATCTAAGGATGATATTGAAGTTCTTCATGGAAGGACATTGACTACTCCTGTGGCACTTATCAAATGTTTGAGGTCTATTAAGGAGTATGCGTTCGTCGCGTCAGAATATCCCGTTGTGATAACGTTAGAAGACCATCTTACTCCTGATCTTCAAGCCAAAGTGGCTCAGATGGTTACTCAAACATTTGGAGACATACTATTTTGTCCTAGCTCAGAAAGCTTGAAGGAATTTCCTTCACCCGACTCGCTCAAAAGGAGGATTATCATATCAACAAAACCACCTAAAGAGTACCTTGAGGCAAAAGAAGGACAGGAAAAGGAGGAATCAGTAAAGGGAAAGTCTTCAGGGGATGAAGAAGCTTGGGGCAAAGAAGTCCCTAGTTTGAGAGGGGGTACCATATCTGATTACAAGCAGAACAGTGGCGACGACGATGAAGATGATCTTAATGAGGATGAAGATTCTGATGACGCAGAAAAGCCACGTCAAAATGTTTCCGATGAATATAGACGTTTAATTGCTATTCATGCTGGGAAACCTAAAGGTGGATTAGTGGAAGGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGTCACAGCTCGAAAAGGCGGCTGAAACATATGGAAAAGAAATTGTCGGGTTTACTCAGAGGAATATACTGAGAGTGTATCCGAAAGGTACTCGCATTACCTCGTCAAATTATAATCCATTAATTGGGTGGATGCACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGAAGGTCTCTTTGGTTGATGCAAGGAATGTTCAAAGCCAATGGAGGCTGTGGTTTTGTTAAAAAACCAGATTTTCTATTAAAAACTGGTCCCAAAAATGAGGTTTTTGATCCTAAAGCTTCTTTGCCATTGAAAACTACTTTGAAGGTGACTATATATATGGGGGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGACTTCTATGCAAGGGTGGGGATTGCTGGAGTCCCTTCTGACACTATTATGAAAAAAACTAAAACAATAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCCCACTTTCGGTTCCGGAGTTGGCGCTGCTTCGTATAGAGGTTCATGAGTACGACATGTCTGAGAAGGATGACTTTGGCGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAATTCCATTACATTCCCGCAAAGGAGAAAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAGTTCGTCTGA 1788 0.4267 MTSKQKQTYNVCFCCRRRFKLAISEAPPAIKELYHKYSDENAIMTASHLQRFLIEVQGDDNVTENEAQSIIDGHKHLSIFHRRGLNLESFFKFLFSDNNPPLLPSRGVHQDMTLPLSHYYIHTGHNSYLTGNQLSSDCSDAPIIVALQRGVRVIELDIWPNGSKDDIEVLHGRTLTTPVALIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAQMVTQTFGDILFCPSSESLKEFPSPDSLKRRIIISTKPPKEYLEAKEGQEKEESVKGKSSGDEEAWGKEVPSLRGGTISDYKQNSGDDDEDDLNEDEDSDDAEKPRQNVSDEYRRLIAIHAGKPKGGLVEGLKVDPDKVRRLSLSESQLEKAAETYGKEIVGFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGFVKKPDFLLKTGPKNEVFDPKASLPLKTTLKVTIYMGEGWYYDFKHTHFDQFSPPDFYARVGIAGVPSDTIMKKTKTIEDSWLPSWNEVFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAIPLHSRKGEKYNNVKLLMRFEFV 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01684 595 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 467 594 IPR035892 -
Vifa2g01684 595 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 594 IPR001192 GO:0035556
Vifa2g01684 595 SUPERFAMILY PLC-like phosphodiesterases 110 448 IPR017946 GO:0006629|GO:0008081
Vifa2g01684 595 ProSiteProfiles C2 domain profile. 448 577 IPR000008 -
Vifa2g01684 595 SUPERFAMILY EF-hand 20 112 IPR011992 -
Vifa2g01684 595 MobiDBLite consensus disorder prediction 302 316 - -
Vifa2g01684 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01684 595 Gene3D C2 domain 463 595 IPR035892 -
Vifa2g01684 595 MobiDBLite consensus disorder prediction 258 328 - -
Vifa2g01684 595 FunFam Phosphoinositide phospholipase C 462 595 - -
Vifa2g01684 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 110 254 - -
Vifa2g01684 595 CDD C2_PLC_like 465 594 - -
Vifa2g01684 595 Pfam C2 domain 468 568 IPR000008 -
Vifa2g01684 595 SMART C2_3c 467 575 IPR000008 -
Vifa2g01684 595 SMART plcx_3 110 254 IPR000909 -
Vifa2g01684 595 Gene3D Phosphatidylinositol (PI) phosphodiesterase 106 460 IPR017946 GO:0006629|GO:0008081
Vifa2g01684 595 SMART plcy_3 330 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01684 595 Pfam Phosphoinositide-specific phospholipase C, efhand-like 30 96 IPR015359 -
Vifa2g01684 595 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 359 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01684 595 PRINTS Phospholipase C signature 238 255 IPR001192 GO:0035556
Vifa2g01684 595 PRINTS Phospholipase C signature 406 424 IPR001192 GO:0035556
Vifa2g01684 595 PRINTS Phospholipase C signature 141 161 IPR001192 GO:0035556
Vifa2g01684 595 PRINTS Phospholipase C signature 561 571 IPR001192 GO:0035556
Vifa2g01684 595 PRINTS Phospholipase C signature 115 133 IPR001192 GO:0035556
Vifa2g01684 595 PRINTS Phospholipase C signature 385 406 IPR001192 GO:0035556
Vifa2g01684 595 MobiDBLite consensus disorder prediction 258 286 - -
Vifa2g01684 595 Pfam Phosphatidylinositol-specific phospholipase C, X domain 112 254 IPR000909 -
Vifa2g01684 595 CDD PI-PLCc_plant 109 434 - -
Vifa2g01684 595 Gene3D - 25 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01684 Vifa-Chr2 438128925 438131804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01684 6 595 Acyl Lipid Metabolism Gene Families AT3G55940 67.905 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01684 K05857 - gmx:100784534 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01684 2 438128925 438131804 Vifa1g02170 1 347412423 347415734 ECH
Vifa2g01684 2 438128925 438131804 Vifa2g01684 2 438128925 438131804 ECH
Vifa2g01684 2 438128925 438131804 Vifa1g02170 1 347412423 347415734 PCT