Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02170 ATGGCCACATTCACGTATAACTACAAAATGTTCAAATGCTTTAACAGAAAATACGCTTTCACAGAGCAAGCGCCACCGTTGGATGTCAAGGAAGTTTTTTCGCAATTCTCCGATGGTGGTTCGTTCATTTCCGCTGATCAGCTAAGAAGGTTTTTCCTTGAACACCAAGGCGAAACAGATTGCACCGAAGATGATGCCAAAAGGATCGTTGAAAATGCGCTGCAGTCGCGGAAAGGGAGTCCGGAAAGAGGTGGCGGAGGTGACGGTGTTTCTGGGATAGGTGAGGGACTCACTGTTGAAGAATTCTTTCAGTTTTTGTTGTTTGATGAATTCAATGGTCCTCTCAAATCACAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATACACAGGACACAATTCCTATCTAACTGGGAATCAGCTAAGCAGCGATTGCAGCGATGTGCCAATCATAAAAGCGTTGCAACTAGGCGTCCGAGTAATTGAACTTGATTTGTGGCCAAATTCAGCTAAAGATGACATTGATGTAGTTCATGGAAGGACACTTACCACTCCTGTTTCACTTCTCCAATGTTTGAAGTCCATAAAAGAATACGCATTTGTTAAATCTCGTTACCCTGTCATTATAACTTTAGAAGATCATCTTACACCAGATCTTCAAGCTAAAGTTGCAGAGTTGACAACTCAAACATTTGGAGATATGCTGTATTTACCTCAGACAGAACCTATGACAAAATTCCCCTCACCAGAATCACTAAAAGATCGAGTTCTTATATCGACGAAACCACCCAAGGAATATCTTGATGTCAGACAATTTAAGGATACTAGTGACAGTGAAAGGGAAGTTGGTGAAGAAGGATCGGTGTCACCAGCCCTTAGTTCTGAAGCTGATGACAAACTTAATGGAAGCGATGTTGATGAAGAAGGTTTCAATCCTCATGATAAAAAACCAGACCAACAGAGTGTGTCACAGTACAAACGTTTGATTACAATCCATGCTGGTAAACCCAAGGGTAATATAAGGGACCATCTAATTATGGCTGGTAATGTTAAGCGCTTGAGCTTGAGTGAAATGGAACTCGAAAAAGCTTCTCTCACTTATGGAGCTGATATTGTTAGGTTTACACAGAAGAATATTATTAGAGTGTATCCAAAGGGAACTCGTGTCAACTCCTCAAATTACAGGCCACATATAGGATGGATGTATGGAGCTCAGATGGTAGCACTTAACATGCAGGGGCATGGAAAATCACTCCGGTATATGCAAGGGATGTTTAGAGCAAATGGAGGGTCTGGTTATGTGAAAAAACCTGAGTTTCTTTTGGCAAAAGGTCCGCACAATGAGTGTTTTGATCCTAAAAAAACTCTGCCAGCAAAGAAGACATTGAAGGTGAAAGTGTATTTGGGACATGGGTGGAGCTTAGATTTTAGCAAAACACACTTTGATACATTCTCTCCTCCAGACTTTTACACAAAGATTTGTATTGTTGGAGTACCCGCCGATAAAGTCGATAAGAAGACCAAAGTAATTCATGACGATTGGTTTCCTGTTTGGGATGAGGAGTTTGATTTTCCTTTGAGTGTTCCAGAGCTTGCTTTGCTTAGTATAGAAGTTAGAGAGTATGATAAGCATGAAAAGGATGATTTTGGTGGACAAATATGTTTGCCAGTTCCTGAGCTAAAATCTGGATTCAGATCAGTCCCTATGTATGATAAGAAGGGTGAAAAATTAAAATCAGTAAAGCTTTTAATACGGTTTCAGTTTACATGA 1782 0.4029 MATFTYNYKMFKCFNRKYAFTEQAPPLDVKEVFSQFSDGGSFISADQLRRFFLEHQGETDCTEDDAKRIVENALQSRKGSPERGGGGDGVSGIGEGLTVEEFFQFLLFDEFNGPLKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQLGVRVIELDLWPNSAKDDIDVVHGRTLTTPVSLLQCLKSIKEYAFVKSRYPVIITLEDHLTPDLQAKVAELTTQTFGDMLYLPQTEPMTKFPSPESLKDRVLISTKPPKEYLDVRQFKDTSDSEREVGEEGSVSPALSSEADDKLNGSDVDEEGFNPHDKKPDQQSVSQYKRLITIHAGKPKGNIRDHLIMAGNVKRLSLSEMELEKASLTYGADIVRFTQKNIIRVYPKGTRVNSSNYRPHIGWMYGAQMVALNMQGHGKSLRYMQGMFRANGGSGYVKKPEFLLAKGPHNECFDPKKTLPAKKTLKVKVYLGHGWSLDFSKTHFDTFSPPDFYTKICIVGVPADKVDKKTKVIHDDWFPVWDEEFDFPLSVPELALLSIEVREYDKHEKDDFGGQICLPVPELKSGFRSVPMYDKKGEKLKSVKLLIRFQFT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02170 593 CDD C2_PLC_like 463 593 - -
Vifa1g02170 593 SMART C2_3c 465 573 IPR000008 -
Vifa1g02170 593 SMART plcx_3 121 265 IPR000909 -
Vifa1g02170 593 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 265 - -
Vifa1g02170 593 SMART plcy_3 329 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02170 593 FunFam Phosphoinositide phospholipase C 460 593 - -
Vifa1g02170 593 Pfam C2 domain 466 567 IPR000008 -
Vifa1g02170 593 ProSiteProfiles C2 domain profile. 446 575 IPR000008 -
Vifa1g02170 593 Pfam Phosphoinositide-specific phospholipase C, efhand-like 28 72 IPR015359 -
Vifa1g02170 593 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 465 592 IPR035892 -
Vifa1g02170 593 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 10 592 IPR001192 GO:0035556
Vifa1g02170 593 SUPERFAMILY EF-hand 8 123 IPR011992 -
Vifa1g02170 593 MobiDBLite consensus disorder prediction 303 325 - -
Vifa1g02170 593 Gene3D - 24 113 - -
Vifa1g02170 593 Gene3D C2 domain 461 593 IPR035892 -
Vifa1g02170 593 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 357 443 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02170 593 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 358 444 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02170 593 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 265 IPR000909 -
Vifa1g02170 593 SUPERFAMILY PLC-like phosphodiesterases 121 445 IPR017946 GO:0006629|GO:0008081
Vifa1g02170 593 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 457 IPR017946 GO:0006629|GO:0008081
Vifa1g02170 593 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Vifa1g02170 593 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Vifa1g02170 593 PRINTS Phospholipase C signature 559 569 IPR001192 GO:0035556
Vifa1g02170 593 PRINTS Phospholipase C signature 383 404 IPR001192 GO:0035556
Vifa1g02170 593 PRINTS Phospholipase C signature 249 266 IPR001192 GO:0035556
Vifa1g02170 593 PRINTS Phospholipase C signature 404 422 IPR001192 GO:0035556
Vifa1g02170 593 MobiDBLite consensus disorder prediction 275 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02170 Vifa-Chr1 347412423 347415734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02170 5 592 Acyl Lipid Metabolism Gene Families AT2G40116 56.515 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02170 K05857 - gmx:100777010 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01684 2 438128925 438131804 Vifa1g02170 1 347412423 347415734 ECH
Vifa1g02170 1 347412423 347415734 Vifa1g02170 1 347412423 347415734 ECH
Vifa2g01684 2 438128925 438131804 Vifa1g02170 1 347412423 347415734 PCT