Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01683 ATGAAAGCAAAGGTCTTAAAATTATCAAAAATGTTGACCAAAAAAGGTAAAGTGAATAAGGAAGAACCACCTTTGGATCTTGTAGAAGCTTTTTTCAAGTTCTCCAATGGTGAAAACAACATGTCAAAGGATCAGCTACTTGGATTCATGGTGGAACATCAAGGAGAACAAAACTGCACCTTATTGGATTTGGAACCAATCATTGAAAAGGTTTTGCAAATGGGAAGTTCAAGTTCTAGCATTGAAACTAGAAATGCTCAAGGACTTAGTATTGATGACTTTGTCAATTTTTTGCTTCTTGATGATTTCAACGGTCCCTTAAAAGATGAGGTGCATCATGATATGGAAGCTCCATTGTCACATTATTTCATGTACACAGGACACAATTCATACCTTACAGGAAATCAATTAACTAGTGTGAGTAGTGATGTGCCAATTATAGAGGCTTTGAAACAAGGTGTACGAGTTATTGAACTTGATTTATGGCCATCTTCTACTAAAGATGGTGGTATTAAAGTTGTTCATGGAAGGACTCTTACCACTCCAGTTGCACTAACCAAATGTTTGGAATCCATAAAGAAACATGCCTTTGTCAAATCTGATTTTCCAGTCATTCTCACTTTGGAAGATCACCTAACTCCAAAACTTCAGGCTAAATTTGCACAAATGGCGATTCAAATATTTGGAGAAATGCTCTATTGTCCCAAGACAGATTATTTAACAGAATTTCCCTCACCAGCCTCCCTCAAAAATATGGTAGTTATATCAACTAAACCACCAAAGGAATCTCCTCAATCAGAAAGAGCCACACATGATGTGTCAAATGGAAGTGAATCTTCTGAAGATGAATCATGGGAGTTTCAAGATTCTATGGCTAAACTGAAAACTATTGACAAGAATGTAAGTGATGAAGAGAAGCTAGAAGATATAAGCACAAGTGATTACAACGCAAACCAACAAAGTCCGCGCGGATACAAACATTTGATTACAATCCATGGTGGAAAATCACATGGTACAATGAAGGATAAACTAAAAGTTGATGGTGGTAAAGTTAGAAGACTAAGCTTGAGTGAGAAGAAACTCAAAACTGCTTCTGAATCTCATGGACCTGACCTGATTCGGTTCACACAGAAAAATATCCTCAGAATTTTTCCTAGAGGAGAACGCGTTCATTCCTCGAATTTTAAGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGTCATGGCAAATCGCTCCGGTTGATGCAAGGGATGTTCAAAGCAAATGGAGGGTGTGGTTATGTGAAAAAACCTGAATTTCTAATTCAAGAAAGTGCACATTTTGATCCTAAAAAAACACTACAAGTGAGGCAGATATTAAAAGTAAAAGTATACAAAGGAGTTGGCTGGAGATCAGACTTCAGTCGAACGCACTTCGACCGATTCTCTCCACCAGACTTTTACACAAAGGTTTGTATTGTTGGAGTGGGAGCTGATAGTGTGAAGAAGAAAACAAGTGTAAAGATGGACAATTGGTATCCTGTTTGGGACGAAGAGTTCGAATTCCGTTTAACTGTTCCGGAGCTCGCGTTGCTTCGGATAGAAGTAAAGGATAAAGATAAGACAACAGATGATTTTGCTGGACAGACATGTTTGCCTGTATCAGAACTAAAACACGGATTTCGATCTGTTCGTTTGTGTGACTTAAAGGGAAGGAAATTTAACTCTGTCAAGCTTTTGCTTCGCTTCCAAATTGAAACTTAG 1764 0.3815 MKAKVLKLSKMLTKKGKVNKEEPPLDLVEAFFKFSNGENNMSKDQLLGFMVEHQGEQNCTLLDLEPIIEKVLQMGSSSSSIETRNAQGLSIDDFVNFLLLDDFNGPLKDEVHHDMEAPLSHYFMYTGHNSYLTGNQLTSVSSDVPIIEALKQGVRVIELDLWPSSTKDGGIKVVHGRTLTTPVALTKCLESIKKHAFVKSDFPVILTLEDHLTPKLQAKFAQMAIQIFGEMLYCPKTDYLTEFPSPASLKNMVVISTKPPKESPQSERATHDVSNGSESSEDESWEFQDSMAKLKTIDKNVSDEEKLEDISTSDYNANQQSPRGYKHLITIHGGKSHGTMKDKLKVDGGKVRRLSLSEKKLKTASESHGPDLIRFTQKNILRIFPRGERVHSSNFKPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFKANGGCGYVKKPEFLIQESAHFDPKKTLQVRQILKVKVYKGVGWRSDFSRTHFDRFSPPDFYTKVCIVGVGADSVKKKTSVKMDNWYPVWDEEFEFRLTVPELALLRIEVKDKDKTTDDFAGQTCLPVSELKHGFRSVRLCDLKGRKFNSVKLLLRFQIET 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01683 587 MobiDBLite consensus disorder prediction 257 285 - -
Vifa2g01683 587 SMART plcy_3 325 442 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01683 587 ProSiteProfiles C2 domain profile. 438 568 IPR000008 -
Vifa2g01683 587 Pfam C2 domain 459 560 IPR000008 -
Vifa2g01683 587 Gene3D C2 domain 454 587 IPR035892 -
Vifa2g01683 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 458 585 IPR035892 -
Vifa2g01683 587 Pfam Phosphatidylinositol-specific phospholipase C, X domain 115 258 IPR000909 -
Vifa2g01683 587 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01683 587 MobiDBLite consensus disorder prediction 264 278 - -
Vifa2g01683 587 SUPERFAMILY PLC-like phosphodiesterases 113 443 IPR017946 GO:0006629|GO:0008081
Vifa2g01683 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 355 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa2g01683 587 FunFam Phosphoinositide phospholipase C 454 586 - -
Vifa2g01683 587 SUPERFAMILY EF-hand 17 115 IPR011992 -
Vifa2g01683 587 SMART C2_3c 459 566 IPR000008 -
Vifa2g01683 587 Gene3D - 23 105 - -
Vifa2g01683 587 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 22 585 IPR001192 GO:0035556
Vifa2g01683 587 CDD C2_PLC_like 458 586 - -
Vifa2g01683 587 PRINTS Phospholipase C signature 401 419 IPR001192 GO:0035556
Vifa2g01683 587 PRINTS Phospholipase C signature 380 401 IPR001192 GO:0035556
Vifa2g01683 587 PRINTS Phospholipase C signature 118 136 IPR001192 GO:0035556
Vifa2g01683 587 PRINTS Phospholipase C signature 144 164 IPR001192 GO:0035556
Vifa2g01683 587 PRINTS Phospholipase C signature 552 562 IPR001192 GO:0035556
Vifa2g01683 587 PRINTS Phospholipase C signature 242 259 IPR001192 GO:0035556
Vifa2g01683 587 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 113 258 - -
Vifa2g01683 587 Gene3D Phosphatidylinositol (PI) phosphodiesterase 110 453 IPR017946 GO:0006629|GO:0008081
Vifa2g01683 587 SMART plcx_3 113 258 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01683 Vifa-Chr2 438122610 438126013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01683 7 586 Acyl Lipid Metabolism Gene Families AT2G40116 54.139 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01683 K05857 - gmx:100803435 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01683 2 438122610 438126013 Vifa2g01683 2 438122610 438126013 ECH
Vifa2g01683 2 438122610 438126013 Vifa1g02169 1 347327741 347330248 PCT