Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02169 ATGGGAAATAGCATAGTAACATATAACAAATACAAAAGTTTCTTGTTCTTTATCAAAAAATACAAGTTGACTGAACTCGTTCCGCCTCAGGATCTTCAAGAGGTTTTCTCCAAGTTTGCCGGAGGAGGATCATACATGTCGACCGAGCAATTGCATCGGTTTCTTGTCGAGCATCAAGGCGAAGAGAGTTTCACCTTATCGGATTCGGAGAAAATTATCGACAGGATTTTGCAACTGAGAAGGACACATATGGAAACGATTCATGTTGATCTAAGTAGAGAAAGGGAAATCACCCTTGATGATATCTTTCGATTTTTGCTCCTACATGATTTCAACGGTCCTTACAAAAATGAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACAGGACACAATTCCTATCTTACTGGAAATCAATTAAGCAGTGATTGCAGTGAAGAGCCAATCATAAAGGCGCTACAACGAGGCGTGCGTGTTATCGAACTCGATTTATGGCCAACTTCTAATAAAGATGATATTAAAGTGGATCATGGATGGACACTTACAAATCCTGTCTCACCTATCAAATGTTTGGAGTCTATAAAGAAATATGGTTTTGTATCATCTGAATATCCAGTGATCATAACTATAGAAGATCATCTTACTGAAGAACTTCGAGCGAAATTCGCAGAAATGGCAACTCAAATATTTGGAGAAATGCTTTATTATCCTCAAGCAGAATGTTTAAACTTAACAGAATTCCCTTCACCGGAATCATTGAAAAACCGAGTTATTATATCAACCAAACCTCCTAAAGAACGCTTTGAGTCCAACCGGATCAAGGACAACGGCAACTATCCTAATCTAGATGGAAGTAGTGAGTCATCAGAAGACGAATCATCGGATTCCGCGAATGAAGTGGAAAGTAAGAGCCCGAATGGACGGGATCGCGACGAGGGAGAAACGAGTTCCTGTGAATGTGATCAAAGATTATTTCAAGAGTGTTCACCTGATTACAAAAGTATAATCACCATTCACAATAAGAAACTCAAGGGTAGCTTGAAAGATAAATTGAAAACTGATGGTGAACTTAGACGGTTAAGTTGGAGCGAAACAATGTTAGAAAAGGCTTCAGAATCTCATGCAACAGACATCATTAGGTTCACACAGAAAAATATCCTCAGGGTATATCCAAGGGCGACACGTGTTAAATCGTCAAATTTCAAACCATATCTTGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCTTGGAAAATCTCTCTGGTTGATGCAGGGGATGTTCAGAGCAAACGGAGGATGTGGTTATGTAAAGAAACCTGAAATTCTAATGCAGAAACTTCACTGTGACCATGAGTTTGATCCAACAAGAATAATGCCACTAAAGAAGACATTAAAAGTGAAAATTTACATGGGACATGGATGGAGCTTAGATTTCAGTCCTACACACTTTGATATGTTCTCTCCACCAGACTTTTACATAGAGGTTGGTATTGTTGGTATGCCTCGTGATATTACAAAGAAGAAAACTAAAGTGATCATGGACAATTGGTTTCCTGTGTGGAATGAAGAGTTTGAGTTCCCTTTGACTGTTCCAGAGATTGCTTTACTTCAGATACAAGTAAAAGACAAAGATCCAACAGGAAAAGATGATTTTGCTGGTCAAACATGTTTGCCAGTGTCAGAGTTAAGATTTGGATTTAGATCAGTCCCTTTGTTTAATGAAAAGGGAGAACAATTTAAATCTGTAAAGTTGCTAATGAGCTTTCAATTTGAATGA 1806 0.3832 MGNSIVTYNKYKSFLFFIKKYKLTELVPPQDLQEVFSKFAGGGSYMSTEQLHRFLVEHQGEESFTLSDSEKIIDRILQLRRTHMETIHVDLSREREITLDDIFRFLLLHDFNGPYKNEVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIKALQRGVRVIELDLWPTSNKDDIKVDHGWTLTNPVSPIKCLESIKKYGFVSSEYPVIITIEDHLTEELRAKFAEMATQIFGEMLYYPQAECLNLTEFPSPESLKNRVIISTKPPKERFESNRIKDNGNYPNLDGSSESSEDESSDSANEVESKSPNGRDRDEGETSSCECDQRLFQECSPDYKSIITIHNKKLKGSLKDKLKTDGELRRLSWSETMLEKASESHATDIIRFTQKNILRVYPRATRVKSSNFKPYLGWMYGAQMVAFNMQGLGKSLWLMQGMFRANGGCGYVKKPEILMQKLHCDHEFDPTRIMPLKKTLKVKIYMGHGWSLDFSPTHFDMFSPPDFYIEVGIVGMPRDITKKKTKVIMDNWFPVWNEEFEFPLTVPEIALLQIQVKDKDPTGKDDFAGQTCLPVSELRFGFRSVPLFNEKGEQFKSVKLLMSFQFE 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02169 601 SMART C2_3c 473 581 IPR000008 -
Vifa1g02169 601 SUPERFAMILY EF-hand 5 123 IPR011992 -
Vifa1g02169 601 SUPERFAMILY PLC-like phosphodiesterases 121 454 IPR017946 GO:0006629|GO:0008081
Vifa1g02169 601 MobiDBLite consensus disorder prediction 301 321 - -
Vifa1g02169 601 CDD C2_PLC_like 471 601 - -
Vifa1g02169 601 FunFam Phosphoinositide phospholipase C 468 601 - -
Vifa1g02169 601 SMART plcy_3 337 453 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02169 601 Gene3D - 23 113 - -
Vifa1g02169 601 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 13 600 IPR001192 GO:0035556
Vifa1g02169 601 Gene3D C2 domain 469 601 IPR035892 -
Vifa1g02169 601 ProSiteProfiles C2 domain profile. 452 583 IPR000008 -
Vifa1g02169 601 Pfam Phosphoinositide-specific phospholipase C, efhand-like 29 75 IPR015359 -
Vifa1g02169 601 MobiDBLite consensus disorder prediction 271 321 - -
Vifa1g02169 601 Pfam C2 domain 474 572 IPR000008 -
Vifa1g02169 601 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 364 450 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02169 601 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 466 IPR017946 GO:0006629|GO:0008081
Vifa1g02169 601 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Vifa1g02169 601 PRINTS Phospholipase C signature 391 412 IPR001192 GO:0035556
Vifa1g02169 601 PRINTS Phospholipase C signature 412 430 IPR001192 GO:0035556
Vifa1g02169 601 PRINTS Phospholipase C signature 567 577 IPR001192 GO:0035556
Vifa1g02169 601 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Vifa1g02169 601 PRINTS Phospholipase C signature 251 268 IPR001192 GO:0035556
Vifa1g02169 601 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 366 452 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vifa1g02169 601 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 471 600 IPR035892 -
Vifa1g02169 601 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 267 - -
Vifa1g02169 601 SMART plcx_3 121 267 IPR000909 -
Vifa1g02169 601 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 267 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02169 Vifa-Chr1 347327741 347330248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02169 2 601 Acyl Lipid Metabolism Gene Families AT2G40116 54.662 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02169 K05857 - gmx:100820253 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01683 2 438122610 438126013 Vifa1g02169 1 347327741 347330248 PCT