Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01556 ATGGTGTTTAAGAAGAGGGCAAATAATGGATTCACTGGCTTTCAAGTTCCCGTTATTCCTAGAGCTCCTAGATCTGCAAGACGGAGGGGCCCATTGAACAAAACGGTTGACGATGGTCAAGTTTGTGCATTTGAAATATTGGCATCTATAGCTGGCAAGCTATTGGAGGAGGGTGAAAGTTCGGCGTCTAGCAATGCTTCAGGAGGAAATAGCGAAGGCATCATTGTGAAAAATCGAGAAGATGAAGTTAAGCCATCGGTAACGGAGGGAATTCACCAGGGAAGCTGTAGAGGGAGTATTTTCACAACGGAGGTAGCCTCACAAAACCGTGATCAGAAACCTATTCTGCACGCCAATTCCGATTTTCCATTGGAAAAGGGTGAAAGAGCTAATGTGAAGACCGAAAATATTGAATCGGATGATAAATATGTGAATTATTCTAATAGATTAGTAGTAGACGCACCTGAAAATTTCAGGGAGTCTTATAACAGGAAAATAAAGAAAGGATACAGATCTGATAAATGTGGTTTGAAAGACCGGTTAGAATTGTACATGTCTCCTTCTCTGGTCGACTCAAAAGTTAATGTAAAATATCCATTTCATAGGAAGCCATTTCCAACTGATTCCTTTACCAAGGATGGGAATGACATTAAGTTAGATTTTAGAGATGATGACGAAAACTTTATAAGGTGTACAAAGGTTTGCGCCAAGTCGAAGACTTTTAGGTCTCCACGACGTATGGCACACCGCAGAATCAAGAATCTGCTGTCTTCTAAATACTGGAACGTTGCTCCAAAATTGAAGGACTGTGAGCTTTCTAGATCTGATCTAGAAGTACCTCTTTATAGTAAGAGGAAGACTTCTCACGGATCCGACAAATCTCGCCACAACACTACTGTTAAGAGGAGGAAGTTCTTTGACCGGGTTTCTGGAGTTACTTCTGACGGAGGATTCAGCAGTGAGAGTGTGTCTAATTCGCCCGAGAAAGGAAATGATGGACACAAGCCTAGCTCTTCTGCAAAACTACAAGTAACCGAGGAATCTCGTGTGAAGTTTAGCATCAACTCATTTAGAATACCAGAGCTTTACATTGAGGTTCCCGAAACTGCAACCGTCGGTTCACTAAAGAGGACGGTCATGGAGGCGGTGATGGCTATAATTGAAGGTGGTATGCATGTTGGTGTTCTTCTTCAGGGCGAAGCAATCGGAGACGACAATAGAACACTTGAGCAGACAGGTTTATCTTGCAATGAGAATCTCGATACCCTTAGTTTCATGTTGGAGCCTAGTTCTCTAGTAGCCTCTCCAGTCTCTTGTATTGGCGATCCTTCTTCTCAATGCGATACATCCGAACCTACCAGGTCTCCAGAAACTCTTGCATTAGAGTCAGTGATAACCGATACTACTGTACATGACTCCAATTTACCGATAATTCCAGCCAACCTAGTGGAAAATAACCGTGATTCTGCTTATTCTCCCACTGACACCATAGTTGACAAAATAACTCCAGATTCCAAAGCGATAGTTGCTCTCCCGGTTAGTACCGAATCATTAGCCATGGTTCCGTTGAGTCAGAAAATCAAGCGCTCTGAGTTTGTACATCGTCGAACCAGGAGACCGTTCTCTGTGACTGAGGTAGAAGCACTTGTTCATGCAGTTGAAGAACTTGGGACCGGAAGGTGGCGTGATGTTAAGCTGCGAGCTTTTGATAATGCAGATCATAGAACTTATGTTGACTTAAAGGATAAATGGAAAACACTAGTGCACACTGCAAAAATCTCCCCACAACAAAGGAGGGGGGAGCCAGTACCTCAGGAGCTGTTGGACAGGGTTTTAGGAGCACATGCTTATTGGTCCCAGCACCAAATCAAGCAACATGGGAAACATCAAGGTGGAACATTGAAGATTACAGAAGCTTCAGCTGAAAGGGTGTCAATTCAGGTGTAG 1947 0.433 MVFKKRANNGFTGFQVPVIPRAPRSARRRGPLNKTVDDGQVCAFEILASIAGKLLEEGESSASSNASGGNSEGIIVKNREDEVKPSVTEGIHQGSCRGSIFTTEVASQNRDQKPILHANSDFPLEKGERANVKTENIESDDKYVNYSNRLVVDAPENFRESYNRKIKKGYRSDKCGLKDRLELYMSPSLVDSKVNVKYPFHRKPFPTDSFTKDGNDIKLDFRDDDENFIRCTKVCAKSKTFRSPRRMAHRRIKNLLSSKYWNVAPKLKDCELSRSDLEVPLYSKRKTSHGSDKSRHNTTVKRRKFFDRVSGVTSDGGFSSESVSNSPEKGNDGHKPSSSAKLQVTEESRVKFSINSFRIPELYIEVPETATVGSLKRTVMEAVMAIIEGGMHVGVLLQGEAIGDDNRTLEQTGLSCNENLDTLSFMLEPSSLVASPVSCIGDPSSQCDTSEPTRSPETLALESVITDTTVHDSNLPIIPANLVENNRDSAYSPTDTIVDKITPDSKAIVALPVSTESLAMVPLSQKIKRSEFVHRRTRRPFSVTEVEALVHAVEELGTGRWRDVKLRAFDNADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLDRVLGAHAYWSQHQIKQHGKHQGGTLKITEASAERVSIQV 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01556 648 Gene3D - 527 630 - -
Vifa2g01556 648 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 592 IPR017930 -
Vifa2g01556 648 FunFam Telomere repeat-binding protein 1 527 630 - -
Vifa2g01556 648 SMART sant 537 590 IPR001005 -
Vifa2g01556 648 MobiDBLite consensus disorder prediction 59 78 - -
Vifa2g01556 648 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 629 IPR031105 -
Vifa2g01556 648 SUPERFAMILY Homeodomain-like 539 620 IPR009057 -
Vifa2g01556 648 ProSiteProfiles Myb-like domain profile. 533 588 IPR001005 -
Vifa2g01556 648 MobiDBLite consensus disorder prediction 313 342 - -
Vifa2g01556 648 CDD SANT_TRF 539 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01556 Vifa-Chr2 420449291 420452036 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01556 - - gmx:100814318 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01084 1 177759727 177763319 Vifa2g01556 2 420449291 420452036 ECH
Vifa2g01556 2 420449291 420452036 Vifa2g01556 2 420449291 420452036 ECH