Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01084 ATGGTGGCACAGAAGAGGATAGATTATGGATTTGTTGGCTATCAGGTGCCAACGAAGCCACGTGCTGCACGATCAACTAGGAAGAGGGATACATTTCAGACAAGGGTGGAAAACAATCAAATGTGCGCGATTGATTTATTGGCCACCGTAGCATCCGGCACTTTATTGCAAGAGAAACAGAATCCAATCACATCTAGTGATGAATTGATGAAAAAAGATCAGCGCAGATTTGTTAAAGAAGAAGTCCAAGATGGAAATAAACCATTCAAAGCCGAGCTTCCTGATGAAGCAAGTTGTGAGAAAAGGCTTCAACATGGATTTGTTAAGGAAGGGAGCGTTGATATGAACAAGCCGTTAAAAGCCGAGCTTTCTGATGAGGGAAGTAGTGACAGGAAATGTATCTCCACTCTTTCTTTACAGGAGTTCGATCTAAACTCCGGTTTGAAGGAAAGTCTGCATCCTGAAATTGATGGTCGTTCATGCATTGCTTCTATATTAACAAGTTCTAGTTGCTCGGAGAGGTTGGTTACTGACACTTTGTTGGATGTAAAAAGCCATAGTGAAATGAAAAATATAACTAGCAAAGTTGAATTAGGATCCTCTGGATTTCCAGATTGTAGTGATTGCAACTTAGATGTTGATGTAAGTATAGTAAAAGACGAGCTCCGGAATTCTGAGATGCCAATCGGTGCTGAGACTGGAACACGATGTTTTAAGGATCCAATAGACGATAAACCTCCGGCGCTGGTCGTTTCAGATGGAAATGCTAAGTTGTCAGGGCACAGCGATAGCATACCTCGTAGCTCATTGTTAAAAGGTAGTGAGAATGTAACAGTAGTTAGTAGAGATGATGACGAAAACAAATCAGGGTGTGCTCACCCTAGTTCAAAAACTAAGGCCTTTCGGCCAAAGACTTGTATAGGTGATCAAAGAATAAGGAAAAGGTTGGCTTCTAAATATCGGAAAGTTGCTCGAGAATCAAAGCATGATACACTTTCTAACAACGTTTTGGATAGAAATTTCAACACAGTTCAGAATGGTAGGAAGAACAGTTATAGTCACCAAATATCCCAAATGAATATTCCTTTCAAAAAGAGGAAGATTTTTGACTGCAGCTCCACTTCAAATTCTAACGGAAATATCAGAAGTGGCCGCACTTATTATTCAACAAAGAACGACATCAATCAAGGCGTTTCTTGTTCATCATCTCGGATTCGCAAAGATCCTGGAAAGTCATCCCTGGAAGCATATCATCATCGTTCTGGTTTAAAATCTAGAGATTCTCATGTGAAGCTTAGGATCAAATCATTTAGAGTGCCGGAGCTTTTTATTGAGATTCCGGAAACTTCAACCGTTGCATCCTTGAAGAAAGCAGTTATGGAGGCAGTAACTACTCTACTTCGAGGTGGGTTGCGTGTTGGTATGATTCTCCATGGAAAGAAACTTAGAGATGACAGTAAAACTCTACTTCAGACTGGAATTTCTCATGATAACGAGCTGGATGCTTTGGGATTCACCTTGGAGTCTAATGCTTCTCAAAGCCTACCACTCATATGTGCTAAACATTCTCTTAATGTTCCCAGTGGAGACATGCCTATATCTTTAATAGGGCATTCTTCGAGTCCAGCTGTAGTTTTTCCAATTCAAAGGATTCAAGGTGGCAAAAAACTCTCAGATTCCAAAGAACTTGTTACTATTCCTGAAATGGGATCAGGGGGACTAGATATACTTCCAGTGAACCAGAGTCACCAGAAGCCAAAACGAACTGAGATCTCACAACGCCGACGAATTCGTAGGCCTTTTTCTGTTGCTGAAGTGGAGGCACTGGTTGAAGCAGTCGAGAGACTCGGAACCGGAAGGTGGCGTGATGTTAAACTTCGCGCTTTTGATGATGCAAAGCATAGGACATATGTGGATTTGAAGGATAAGTGGAAAACATTGGTACACACAGCAAGAATATCTCCTCAACAGAGAAGAGGTGAGCCTGTCCCCCAAGAACTTTTGGATAGGGTCCTTACTGCTCATGCATATTGGTCCCAACAACAGCTCAAGCATCACCCTGAAACTTGCCTTCTCCTTTAA 2082 0.4164 MVAQKRIDYGFVGYQVPTKPRAARSTRKRDTFQTRVENNQMCAIDLLATVASGTLLQEKQNPITSSDELMKKDQRRFVKEEVQDGNKPFKAELPDEASCEKRLQHGFVKEGSVDMNKPLKAELSDEGSSDRKCISTLSLQEFDLNSGLKESLHPEIDGRSCIASILTSSSCSERLVTDTLLDVKSHSEMKNITSKVELGSSGFPDCSDCNLDVDVSIVKDELRNSEMPIGAETGTRCFKDPIDDKPPALVVSDGNAKLSGHSDSIPRSSLLKGSENVTVVSRDDDENKSGCAHPSSKTKAFRPKTCIGDQRIRKRLASKYRKVARESKHDTLSNNVLDRNFNTVQNGRKNSYSHQISQMNIPFKKRKIFDCSSTSNSNGNIRSGRTYYSTKNDINQGVSCSSSRIRKDPGKSSLEAYHHRSGLKSRDSHVKLRIKSFRVPELFIEIPETSTVASLKKAVMEAVTTLLRGGLRVGMILHGKKLRDDSKTLLQTGISHDNELDALGFTLESNASQSLPLICAKHSLNVPSGDMPISLIGHSSSPAVVFPIQRIQGGKKLSDSKELVTIPEMGSGGLDILPVNQSHQKPKRTEISQRRRIRRPFSVAEVEALVEAVERLGTGRWRDVKLRAFDDAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQLKHHPETCLLL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01084 693 CDD SANT_TRF 599 649 - -
Vifa1g01084 693 Gene3D - 587 689 - -
Vifa1g01084 693 ProSiteProfiles Myb-like domain profile. 593 648 IPR001005 -
Vifa1g01084 693 ProSiteProfiles Ubiquitin domain profile. 430 500 IPR000626 GO:0005515
Vifa1g01084 693 SMART sant 597 650 IPR001005 -
Vifa1g01084 693 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 593 652 IPR017930 -
Vifa1g01084 693 SUPERFAMILY Ubiquitin-like 425 512 IPR029071 -
Vifa1g01084 693 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 690 IPR031105 -
Vifa1g01084 693 SUPERFAMILY Homeodomain-like 599 680 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01084 Vifa-Chr1 177759727 177763319 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01084 - - tpra:123897533 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01084 1 177759727 177763319 Vifa1g01084 1 177759727 177763319 ECH
Vifa1g01084 1 177759727 177763319 Vifa2g01556 2 420449291 420452036 ECH