Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01532 ATGGTTATGCACTTTCTTCTTCTGCTTCTTTTTGCAGTTTCCAATGTTGCAGCTGATGAAGAACCATTCATTGGAGTGAACATTGGTACAGATCTTTCAGACATGCCTCATCCTACTCAAGTAGTTGCATTGCTCAAATCTCAACAAATTCGACATGTTCGACTTTATAATGCAGACCAAGCTATGCTAACCGCGTTATCAAAATCAGGAATTCAAGTAGTTATCTCTGTCCCAAATGAAGAGCTCTTAGCAATTGGTCAATCGAATTCCACCGCTTCGAATTGGGTTTCTCGCAATGTGTTGGCGTATTATCCATCTACAAATATCACAGCAATTTGTGTTGGTTCTGAGGTCTTAACCACTGTCCCAAATGCAGCAAAACTCTTGGTCAATGCACTTAAGTATATTCATTCAGCTCTTATCGCCTCGAAACTTGATTCCAAAATCAAAGTTTCTACGCCGCTTCCTTCTACCATTATACTTGATTCATTTCCACCTTCACAGGCCTTTTTCAATGCGTCGATGAATCAAGTCTTGATTCCAATGCTTGATTTCTTGCAATCCACTCAATCTTATCTCATGCTTAATGTTTATCCTTACTATGATTACATGGAATCAAATGGCGCAATCCCTTTGGAGAACGTGCTCTTTAAACAGATTCCACCAAACAAAGAATCTATTGATTCCAACACACTTCTCCACTACTCCAACGTGTTTGACGCCGTCGTAGATGCAGCTTATTTCGCAATGTCGTATCTGAATTACACTAACATTCCTGTGGTAGTAACTGAAACCGGCTGGCCTTCAAAAGGTAACGCGAACGAGCCCGATGCAACACTAGACAATGCTAATGCTTATAACAGCAACTTGATCAAGCATGTATTGAACAAAACCGGAACGCCGAAACATCCCGGAATTAGTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACACAAAGGCAGGGGCATTGTCAGAGAAAAACTGGGGACTATTTGATTCAAATGGCGTGCCGATTTATGTTTTGCAATTGACAGGTTCAGGAGCAGTTTTGGCAAATGATACAAGTAAAGAAACCTATTGCATTGCTAAAGATGGAGCTGATCCAAAGATGTTGCAGGCTGGAATAGATTGGGCTTGTGGACCTGGAAAAGTGGATTGTTCTCCATTGTTGCAGGGAAAACCATGTTATGATCCTGATAATGTTGTTGCTCATGCTAACTATGCTTTTGATAGTTATTATCATCAGATGGGAAAGTCTAGTGAGTCTTGTGATTTCAAGGGCATGGCTACTATCTCCACTTCTGATCCAAGTCACGGTTCCTGTATATTTTCAAGAAGTTTTGGAAGAAATGACATCTTCTCTAACGCCCCTGCACCATCACCGAATTCATCGGATTCTTCTGTATGTGAATTGGGAGCTAGAAACTTTATAATCATGATTGGAGTTCTAATATGGGGAGTGGCTTTGCTATAA 1479 0.4057 MVMHFLLLLLFAVSNVAADEEPFIGVNIGTDLSDMPHPTQVVALLKSQQIRHVRLYNADQAMLTALSKSGIQVVISVPNEELLAIGQSNSTASNWVSRNVLAYYPSTNITAICVGSEVLTTVPNAAKLLVNALKYIHSALIASKLDSKIKVSTPLPSTIILDSFPPSQAFFNASMNQVLIPMLDFLQSTQSYLMLNVYPYYDYMESNGAIPLENVLFKQIPPNKESIDSNTLLHYSNVFDAVVDAAYFAMSYLNYTNIPVVVTETGWPSKGNANEPDATLDNANAYNSNLIKHVLNKTGTPKHPGISVSTYIYELYNEDTKAGALSEKNWGLFDSNGVPIYVLQLTGSGAVLANDTSKETYCIAKDGADPKMLQAGIDWACGPGKVDCSPLLQGKPCYDPDNVVAHANYAFDSYYHQMGKSSESCDFKGMATISTSDPSHGSCIFSRSFGRNDIFSNAPAPSPNSSDSSVCELGARNFIIMIGVLIWGVALL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01532 492 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 433 IPR044965 GO:0004553|GO:0005975
Vifa2g01532 492 FunFam Glucan endo-1,3-beta-glucosidase 3 23 348 - -
Vifa2g01532 492 Gene3D Glycosidases 23 349 - -
Vifa2g01532 492 SMART X8_cls 360 445 IPR012946 -
Vifa2g01532 492 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Vifa2g01532 492 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Vifa2g01532 492 Pfam X8 domain 361 432 IPR012946 -
Vifa2g01532 492 Gene3D - 354 451 - -
Vifa2g01532 492 FunFam Glucan endo-1,3-beta-glucosidase 4 355 449 - -
Vifa2g01532 492 Pfam Glycosyl hydrolases family 17 24 344 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01532 Vifa-Chr2 414194543 414196845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01532 18 469 Glycoside Hydrolase AT1G66250 70.485 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01532 K19891 - gmx:100799965 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01532 2 414194543 414196845 Vifa2g01532 2 414194543 414196845 ECH
Vifa2g01532 2 414194543 414196845 Vifa1g01623 1 265316502 265318873 PCT