Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01623 ATGGCTTTGCGTTTTCTTCTTCTCCTTTTTGCACTTTCTCTTGTTGCTGCTGATGATGAACCTTTTGTTGGAGTGAACATTGGAACTGACCTCTCTGATATGCCACATCCTACTCAAGTAGTCGCCCTACTCAAAGCACAACAAATTCGACACGTTAGATTGTACGACGCTGACCAAGCTATGCTCATTGCACTTGCAAAAACAGGCATTCAAGTTGTCATAACTGTGCCTAATGAAGAACTCTTGGCAATTGGTCAATCGAATGCTTCGGCTGCCAATTGGGTTTCCCGTAATGTGGTAGCACATTATCCGGCAACCAATATCACTGCCATTTGTGTTGGTTCTGAGGTTTTGACTGCTCTGCCTAATGTGGCAAAAGTTCTTGTCAATGCAATTAAGTACATTCATTCAGCCCTCGTTGCGTCGAATCTTGATCGCCAAGTTAAAGTCTCGACGCCTCTTTCGTCGTCCATCATCCTTGATTCATTTCCACCTTCACAGGCTTTCTTTAACCGATCGCTGAATTCAGTTTTAGTCCCGATACTTGATTTCTTGCAGTCCACCGACTCTTATCTCATGCTTAATATTTACCCTTACTATGATTACATGCAATCAAATGGTGTGATTCCATTAGATTATGCACTCTTCAAGCCTCTCCCTCCAAACAAAGAAGCTGTTGATTCTAATACCCTTCTGCATTACTCCAATGTCTTTGATGCCATGGTCGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACCAACATTCCCGTAGTGGTAACAGAATCAGGGTGGCCTTCAAAAGGTGCATCGAACGAGCCCGACGCAACAATAGACAACGCCAATAACTACAACAGCAATTTGATCAAGCATGTTTTTAACAAAACCGGAACTCCAAAACATCCGGGAGTTGCTGTTAGTACTTACATCTATGAACTATACAACGAGGATACAAAATCCGGACCGTTGTCAGAGAAAAACTGGGGATTATTCGATTCAAACGGTGTACCTATTTACATTTTACACTTGACTGGATCAGGAGCAGTTTTGGCGAATGATACCAGCAATCGAACATTCTGTGTTGCAAAGGACGGTGCTGATCCAAAGATGATACAGGCTGCATTAGATTGGGCATGTGGACCCGGAAAGGTCGAATGCTCTCCATTGCTGCAAGGACAACCATGCTATGAACCAGACAATGTGATAGCACATGCCAATTATGCTTTTAACAGTTACTATAATAACATGGGGAAAACTCCCGATGCATGCGACTTCAAGGGAGTTGCTACAATCACCACCTCAGATCCAAGTCATGGCTCTTGTGTATATCCTGGAAGTCTTGGCAACAAAAACAGCACCTTTGGCAATTCCACTGCACCATCAATGAATTCAAGTTCAGATTCTTCAGCCTATAACATCCACAGCCATGAATTGAGAATTAGAAGCCTTCTAATGGTGACAGGATTTCTAATACTGGGAGTGGTTTTGCTGCTGTAG 1500 0.4293 MALRFLLLLFALSLVAADDEPFVGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALAKTGIQVVITVPNEELLAIGQSNASAANWVSRNVVAHYPATNITAICVGSEVLTALPNVAKVLVNAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLNSVLVPILDFLQSTDSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLLHYSNVFDAMVDAAYFAMAFLNYTNIPVVVTESGWPSKGASNEPDATIDNANNYNSNLIKHVFNKTGTPKHPGVAVSTYIYELYNEDTKSGPLSEKNWGLFDSNGVPIYILHLTGSGAVLANDTSNRTFCVAKDGADPKMIQAALDWACGPGKVECSPLLQGQPCYEPDNVIAHANYAFNSYYNNMGKTPDACDFKGVATITTSDPSHGSCVYPGSLGNKNSTFGNSTAPSMNSSSDSSAYNIHSHELRIRSLLMVTGFLILGVVLLL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01623 499 SMART X8_cls 359 444 IPR012946 -
Vifa1g01623 499 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 433 IPR044965 GO:0004553|GO:0005975
Vifa1g01623 499 Gene3D Glycosidases 22 348 - -
Vifa1g01623 499 Pfam X8 domain 360 431 IPR012946 -
Vifa1g01623 499 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Vifa1g01623 499 FunFam Glucan endo-1,3-beta-glucosidase 4 354 448 - -
Vifa1g01623 499 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Vifa1g01623 499 Gene3D - 353 455 - -
Vifa1g01623 499 FunFam Glucan endo-1,3-beta-glucosidase 3 22 347 - -
Vifa1g01623 499 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01623 Vifa-Chr1 265316502 265318873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01623 17 499 Glycoside Hydrolase AT1G66250 71.074 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01623 K19891 - gmx:100799965 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01623 1 265316502 265318873 Vifa1g01623 1 265316502 265318873 ECH
Vifa2g01532 2 414194543 414196845 Vifa1g01623 1 265316502 265318873 PCT