Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01520 ATGGCTCTCATCGTTAACCTCCCCATTGGAACACCACCGCAAGTTCAACCAATGGTGTTGGACACAGGTAGCCAACTCTCGTGGATTCAGTGTCACAAAAAACAACCTCCAACGGCGTCGTTTGATCCTTCTCTCTCCTCCACTTTCTCTAACCTCCCTTGTACTCACCCTCTCTGTAAACCACGAATTCCCGATTTTACCCTCCCAACTTCCTGTGACCAGAATCGCCTCTGCCATTACTCATACTTCTACGCCGACGGCACTTACGCGGAGGGTAATCTCGCCAGAGAAAAATTCACATTCTCTCGTTCCGTTTCTACCCCTCCTCTCATCCTCGGTTGCGCTACAGAATCTACCGATCCCAGGGGTATTTTAGGAATGAATCTCGGACGGTTATCCTTCGCTCATCAATCGAGAATTACGAAATTCTCATACTGTGTACCCACTCGTCAAACCCGACCCGGGTTTACCCCATCCGGATCTTTCTACATCGGTAACAACCCGAACTCGAAATCGTTCAAGTACATCAAAATGTCGATTTTCCCGGAGCGTCAACGCATGCCGAATCTCGATCCATTAGCCTACACCATCCCATTGGTCGGAATAAGCATCGGCGGGAAGAAGCTCAGCATTTCACCGGCGGTTTTCCGTGCGGACGCTGGCGGGTCGGGTCAAACGATGATTGACTCCGGATCCGAGTTCACTTATTTAGTTGGGGAAGCTTATGATAAAATGCGGGCAGGAGTAGTTAGAGCTGTGGGGGCAAGAATGAAGAAAGACTACGTGTACGGCGGAGTGGCTGACATGTGTTTTGATAGTAAAAATGCGGTTGAGATCGGACGGTTGATAGGTGAGATGGTGTTTGAATTTGAAAGAGGTGTGGAGGTTGTGATTCCGAAGGAGAGAGTACTTGCTGACGTGGGAAGTGGGGTCCACTGTGTTGGGATTGGAAACTCTGATAAATTAGGTGCGGCGAGTAACATTATTGGGAATTTTCATCAGCAAAATCTATGGGTGGAATTTGATCTGGTCAATCGTAGGGTAGGTTTCGGGTAG 1056 0.4877 MALIVNLPIGTPPQVQPMVLDTGSQLSWIQCHKKQPPTASFDPSLSSTFSNLPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLAREKFTFSRSVSTPPLILGCATESTDPRGILGMNLGRLSFAHQSRITKFSYCVPTRQTRPGFTPSGSFYIGNNPNSKSFKYIKMSIFPERQRMPNLDPLAYTIPLVGISIGGKKLSISPAVFRADAGGSGQTMIDSGSEFTYLVGEAYDKMRAGVVRAVGARMKKDYVYGGVADMCFDSKNAVEIGRLIGEMVFEFERGVEVVIPKERVLADVGSGVHCVGIGNSDKLGAASNIIGNFHQQNLWVEFDLVNRRVGFG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01520 351 Gene3D Acid Proteases 3 163 IPR021109 -
Vifa2g01520 351 Pfam Xylanase inhibitor C-terminal 194 350 IPR032799 -
Vifa2g01520 351 Pfam Xylanase inhibitor N-terminal 5 153 IPR032861 -
Vifa2g01520 351 Gene3D Acid Proteases 164 351 IPR021109 -
Vifa2g01520 351 FunFam Aspartyl protease family protein 1 161 - -
Vifa2g01520 351 PANTHER OS07G0603500 PROTEIN-RELATED 4 350 - -
Vifa2g01520 351 CDD pepsin_A_like_plant 4 350 IPR034161 -
Vifa2g01520 351 SUPERFAMILY Acid proteases 5 350 IPR021109 -
Vifa2g01520 351 ProSiteProfiles Peptidase family A1 domain profile. 3 351 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01520 Vifa-Chr2 410119344 410120399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01520 5 350 Miscellaneous Gene Families AT1G77480 23.404 8.02e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01520 - - psat:127083785 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01520 2 410119344 410120399 Vifa2g01520 2 410119344 410120399 ECH
Vifa2g01520 2 410119344 410120399 Vifa1g01656 1 270499702 270501003 PCT