Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01656 ATGGCTCTGTTTTCCTATGTTTCACTCTGCATGGTTCTTCTCTCATCCTTATTTTTCTTCACATGTTTCTCATCAAAACCCAATAGTCACCATGCAAACGACTCATTCTCCATCTCTTTCCCTTTAACATCTCTTCCACTTTCCACAAACACAAAACTTTCTACCCTTTCATCATCTTCATCTTTAAACCTCAAATCATCTTTCAAATATTCTATGGCTCTTGTCGTAACTCTCCCCGTTGGAACACCACCACAGCTTCAACAAATGGTTCTTGACACAGGAAGCCAGCTTTCCTGGATTCAATGTCACGACAAAAAAACAACAAAAAAACAACCTCCGACAACATCATCGTTTGATCCTTCTATGTCCTCGTCTTTCTATGTTCTCCCATGTAACCACCCACTTTGTAAGCCTCGTGTTCCCGATTTTACCCTTCCCACAGATTGTGACGCAAATCGTCTATGTCATTATTCCTATTTCTACGCTGACGGAACTTTAGCCGAGGGTAATCTCGTCAGAGAAACAATCAGTTTCTCTCCTTCCCAAACTACCCCTCCTATTATCCTCGGTTGCGCTACTCAATCTAACGATGCTAAGGGTATTTTGGGAATGAATCTTGGTCGACTTTCTTTCTCTTCTCAAGCTAAAATAAATAAATTTTCCTATTGTACCCCTTTAAAACAAACCCAACCTGCACTCAGTTCATTTTTCCTCGGAAATAACCCGGATTCATCGCGGTTCCATTATGTTAACTTGTTGACTTTTTCTCAAAGTCAACGTATGCCAAATTTGGACCCCTTGGCCTACACACTCCCTTTGCTAGGAATTAGCATTGGTGGGAAGAAGTTGAATATTCCACCTTCGGTTTTCAAACCGGATGCTGGCGGGTCGGGTCAAACCATGATTGACTCCGGATCCGAGTTTACTTATTTAGTGGATGAGGCTTATAATACAATACGTGAGGAGTTGGTTAAGAAAGTGGGTCCCAAAATTAAGAAGGGCTACGTGTACGGTGGTGTAGCTGACATTTGTTTTGATGGAGATGCGATTGAGATCGGACGGTTGGTGGGAGACATGGTGTTTGAGTTTGAGAAAGGGGTGCAAATAGTGATTCCTAAAGAAAGGGTTCTTGCTGAGGTGGAAGGTGGTGTCCATTGTTTTGCAATTGGTAGGTCAGAGAGATTGGGTGCGGGTAATAACATTATCGGCAACATTCATCAACAAAATTTATGGATAGAATTCGATCTTGCGAATCGGAGAGTTGGATTTGGTGAGGCTGATTGTAGCAAATCGGCTAAATAA 1302 0.4201 MALFSYVSLCMVLLSSLFFFTCFSSKPNSHHANDSFSISFPLTSLPLSTNTKLSTLSSSSSLNLKSSFKYSMALVVTLPVGTPPQLQQMVLDTGSQLSWIQCHDKKTTKKQPPTTSSFDPSMSSSFYVLPCNHPLCKPRVPDFTLPTDCDANRLCHYSYFYADGTLAEGNLVRETISFSPSQTTPPIILGCATQSNDAKGILGMNLGRLSFSSQAKINKFSYCTPLKQTQPALSSFFLGNNPDSSRFHYVNLLTFSQSQRMPNLDPLAYTLPLLGISIGGKKLNIPPSVFKPDAGGSGQTMIDSGSEFTYLVDEAYNTIREELVKKVGPKIKKGYVYGGVADICFDGDAIEIGRLVGDMVFEFEKGVQIVIPKERVLAEVEGGVHCFAIGRSERLGAGNNIIGNIHQQNLWIEFDLANRRVGFGEADCSKSAK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01656 433 ProSiteProfiles Peptidase family A1 domain profile. 74 424 IPR033121 -
Vifa1g01656 433 CDD pepsin_A_like_plant 75 428 IPR034161 -
Vifa1g01656 433 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Vifa1g01656 433 PRINTS Pepsin (A1) aspartic protease family signature 300 311 IPR001461 GO:0004190|GO:0006508
Vifa1g01656 433 PRINTS Pepsin (A1) aspartic protease family signature 400 415 IPR001461 GO:0004190|GO:0006508
Vifa1g01656 433 Gene3D Acid Proteases 57 237 IPR021109 -
Vifa1g01656 433 Pfam Xylanase inhibitor C-terminal 268 424 IPR032799 -
Vifa1g01656 433 SUPERFAMILY Acid proteases 75 430 IPR021109 -
Vifa1g01656 433 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 89 100 IPR001969 GO:0004190|GO:0006508
Vifa1g01656 433 Gene3D Acid Proteases 238 433 IPR021109 -
Vifa1g01656 433 PANTHER OS07G0603500 PROTEIN-RELATED 49 429 - -
Vifa1g01656 433 FunFam Aspartyl protease family protein 54 237 - -
Vifa1g01656 433 Pfam Xylanase inhibitor N-terminal 75 239 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01656 Vifa-Chr1 270499702 270501003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01656 76 433 Miscellaneous Gene Families AT1G77480 26.234 4.51e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01656 - - gmx:100790706 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01656 1 270499702 270501003 Vifa1g01656 1 270499702 270501003 ECH
Vifa2g01520 2 410119344 410120399 Vifa1g01656 1 270499702 270501003 PCT