Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01435 ATGACTGATAGAATTCACCCTGCTAATGATTTGGAGTCACAAACCAAACCTACAATTCCTTTGTATCCTCGAAACATTTCCAAGTCCGATAGACGTGACCCGTTGCAACATGAATATTTCAATCCACCTATTCCAAAACGTAAGTTTCAAGTGAGACACTCCCTGCCACCAAAGAAGAAAAGAAGTTGTTGCTGCAGGTTCCTGTGCTGTACCTTCACCATATTGCTGATCCTTATTATTGCAATATCCATCACCATTGGAACACTCTACCTTGTTTTTAGGCCAAAGCTTCCTAAATACTCAGTAGACAGATTGAGAATAGCACAGTTCAATCTGTCTGATAATAACAATCTTTTCGTTACCTTCGATGTAACAGTAACTGCTAGAAATCCAAACAAGAAGATTGGAATATATTATGTAAGTGGAAGCAATATAAGTGCTTTATATAAAGAAACAGAATTATGTGAAGGGTCTTTGCCTAATTTCTATCAAGGTCATCGGAATATAACCGTGCTTAATCTACCTTTAACGGGTCAAACAGAGGATGCAACTGGTTTAGTAAATACTTTGCAGCAGCAGCTGCAAGAGAAAGGTAATTTACCTCTGAATATTAAGGTGAATCAGAATGTGAGGGTTAAGATCGGTAAGTTGAAGCTGTTTAGAGTAAAGTTTCATGTTAGGTGTGAGGTTGTGGTGGATAGCCTTGGTGCTGATAATGATATTAGTATTTCAGACAGTAGTTGTAAGTTCAAGCTTAGGCTGTGA 765 0.3804 MTDRIHPANDLESQTKPTIPLYPRNISKSDRRDPLQHEYFNPPIPKRKFQVRHSLPPKKKRSCCCRFLCCTFTILLILIIAISITIGTLYLVFRPKLPKYSVDRLRIAQFNLSDNNNLFVTFDVTVTARNPNKKIGIYYVSGSNISALYKETELCEGSLPNFYQGHRNITVLNLPLTGQTEDATGLVNTLQQQLQEKGNLPLNIKVNQNVRVKIGKLKLFRVKFHVRCEVVVDSLGADNDISISDSSCKFKLRL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01435 254 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g01435 254 Gene3D - 92 235 - -
Vifa2g01435 254 Pfam Late embryogenesis abundant protein 125 229 IPR004864 -
Vifa2g01435 254 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 28 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01435 Vifa-Chr2 389598213 389598977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01435 34 254 EF-hand Containing Proteins AT5G21130 26.244 6.86e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01435 - - gmx:100781699 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01435 2 389598213 389598977 Vifa2g01435 2 389598213 389598977 ECH
Vifa2g01435 2 389598213 389598977 Vifa1g01570 1 258740593 258741375 PCT