Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01570 ATGACAGATCATCAAAAAATCCACCCATTTCATGATGTTGATCTTGAAGCGCCACAACAACAACAACCTTCAGCTCCTTTAGTAACAAGAAACATGTCAAAATCCGATGATGTTCAACATCATCAACAACAACAACCTCTTCCTACGCAACAACCTAGTATTCCTATGAATCATTATCCAAAACCACCAAAGAAAAGAAGAAGCTGTTGCTGCAGACTCTTCTGTTGGCTATTCAGCATCCTATTGATTCTAATCATCGCAATCGCCATAGCAATCGGAGTCCTCTTCCTGGCTTTCCGCCCCAAAATCCCGAAATACTCCGTGGATGAACTCCACGTCACGCAGTTCGATCTCTCAGGCAACAACAGCTTATCAGTAACTTTCAACCTCTCAATCACTGCAAGAAATCCAAACAAAAGAATCGGAATTGATTATCGAGGTGGAAGTCACATAAGTGCTTGGTACGCAGACACAAAACTATGTGAAGGTTCATTACCTAAATTTTACCAAGGTCATAAAAATGTTACTGTTCTTAGTATACCTTTGGCTGGAGAGACACAGAATGCAACAGGTTTGAGAGATTCTTTACAGCAACAGATTCAAGATGAGGGAAGTATCCCCCTTAATTTAAAGGTGAAACAGCCTGTGAGGATTAAGTTTGGAAAGTTGAAGATTTTTAAGATTAATTTCAGGGTTAGGTGTAGGATTGTGGTGGATAATCTTAATGCTAATAATTCTATTAGAATTAGAAGTAGTAGTTGTAAGTTTAGGTTTAAGCTTTGA 783 0.3883 MTDHQKIHPFHDVDLEAPQQQQPSAPLVTRNMSKSDDVQHHQQQQPLPTQQPSIPMNHYPKPPKKRRSCCCRLFCWLFSILLILIIAIAIAIGVLFLAFRPKIPKYSVDELHVTQFDLSGNNSLSVTFNLSITARNPNKRIGIDYRGGSHISAWYADTKLCEGSLPKFYQGHKNVTVLSIPLAGETQNATGLRDSLQQQIQDEGSIPLNLKVKQPVRIKFGKLKIFKINFRVRCRIVVDNLNANNSIRIRSSSCKFRFKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01570 260 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 32 242 - -
Vifa1g01570 260 MobiDBLite consensus disorder prediction 1 61 - -
Vifa1g01570 260 MobiDBLite consensus disorder prediction 17 52 - -
Vifa1g01570 260 Pfam Late embryogenesis abundant protein 132 234 IPR004864 -
Vifa1g01570 260 SUPERFAMILY LEA14-like 91 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01570 Vifa-Chr1 258740593 258741375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01570 64 260 EF-hand Containing Proteins AT5G21130 30.500 3.47e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01570 - - gmx:100778798 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01570 1 258740593 258741375 Vifa1g01570 1 258740593 258741375 ECH
Vifa2g01435 2 389598213 389598977 Vifa1g01570 1 258740593 258741375 PCT