Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10690 ATGAATACATTCGATACAGAGAAAGTAACCACCACAATAAACCAAAACGAAGAAGAAGATGAAGATGAACTATCTCCCATTGAAGAAGTCCGTTTAACGGTCGCGACGCTTCCAATCGGTCACTTCATGGCGGCGATTCTACCGAAGACGAAGTTTACTCTCCCCGGGTTCAGGTCGAAAGTGATGTCGTTTAACCCGGGTCCGTTTAACATGAAGGAACATGTGTTGATTACTATATTTGCGAATGCGGGAAGTGCGTTCGGATCCGGGTCGCCGTATGCGGTTGGGATTGTGAATATTATTAAAGCGTTTTATGGAAGGAGTATTTCTTTTCATGCTGCTTGGCTTCTCATTATTACTACTCAGGTTCTGGGATATGGATGGGCTGGGTTGCTGAGGAAGTATGTGGTGGAGCCAGCCCATATGTGGTGGCCCAGCACCCTTGTTCAGGTCTCACTTTTCCGAGCTTTGCATGAGAAAGATAATGACCACCACCAAATGTCAAGGGCAAAGTTTTTCTTTATTGCACTAGTATGCAGTTTTTCATGGTATGTGATCCCAGGATACTTGTTCACAACACTCACAAGCATATCATGGGTTTGTTGGGTATTCTCCAAGTCGGTCACAGCTCAGCAGATAGGCTCAGGCATGAAAGGCCTTGGAGTTGGGGCCCTTACACTTGATTGGTCTGCGGTGGCATCATTCTTGTTCAGCCCTCTTATCTCACCATTCTTTGCCATTGTCAATGTTTTTGTGGGCTATGCATTAATAGTCTATACTGTGATTCCCATTGCATATTGGGGCCTAGATGTTTACAATGCTAAAAGGTTTCCAATTTTCTCCTCTCACCTTTTCACTGCTGAAGGTCAAAAATACGACATATCTGCTATTGTCAATGACAAGTTTGAGCTAGATGTTGCAAAGTATACAGAGCAAGGTAGAATTCATCTAAGTGTGTTTTTCGCTCTCACCTACGGCTTTGGATTTGCAACCATAGCATCCACCCTTTCACATGTTGCTTGCTTCTATGGAAGGGAAATTATGGAGCGGTATCAAGCTTCTTCAAAGGGTAAAGAAGATATCCACACAAGATTGATGAAAAGGTACAAAGACATTCCTCCTTGGTGGTTTTACGCGTTGTTGGCTGTGACTCTTGCTGTTTCTCTCGCGCTATGCATCTTTCTCAATGACCAAATTCAGATGCCTTGGTGGGGACTTATCTTTGCCGGAGCTTTAGCTTTTGTGTTTACTCTCCCTATTAGCATCATCACTGCCACCACAAACCAGACACCAGGATTGAATATCATCACTGAGTATGTCTTTGGTTTGATTTACCCTGGAAGACCAATAGCAAATGTATGCTTCAAAACCTATGGTTACATTAGCATGGCACAAGCAGTCTCCTTCCTTAGTGATTTCAAGCTTGGACACTACATGAAAATCCCTCCAAGATCAATGTTCTTAGTTCAGTTCATAGGAACACTGCTTGCAGGAACCATCAACATCGGGGTAGCATGGTGGTTGCTAAACTCTATTGAGAATATATGTCATGATGATCTCCTTCCAGAAGGTAGTCCTTGGACATGCCCAGGTGACCGTGTTTTCTTCGATGCTTCGGTTATTTGGGGTCTGGTAGGACCAAAAAGGATATTTGGTTCTAAAGGAAACTACAGTGTAATGAATTGGTTTTTCCTTGGAGGTGCACTAGGACCAATAATTGTTTGGCTATTGCATAAAGCCTTTCCTAAACAATCATGGATTCCTTTGATTAACCTTCCAGTTCTCCTTGGAGCTACCGGATCGATGCCACCAGCAACACCATTGAACTACAATGCTTGGATTTTCTTCGGAACAGTTTTCAACTTCTTTGTGTTCCGTTACAGAAAGAAATGGTGGCAGAGGTACAACTATGTTCTATCAGCAGCACTTGATACAGGAGTTGCTTTTATGACTGTTTTGCTTTACTTTTCACTGAGTTTGGAAAATAGAAGTATTACTTGGTGGGGAACCAATGGTGAACATTGTCCATTGGCATCTTGTCCGACTGCAAAAGGCATATCGGCTCCTGGTTGCCCACCAAACTTGTGA 2088 0.432 MNTFDTEKVTTTINQNEEEDEDELSPIEEVRLTVATLPIGHFMAAILPKTKFTLPGFRSKVMSFNPGPFNMKEHVLITIFANAGSAFGSGSPYAVGIVNIIKAFYGRSISFHAAWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDNDHHQMSRAKFFFIALVCSFSWYVIPGYLFTTLTSISWVCWVFSKSVTAQQIGSGMKGLGVGALTLDWSAVASFLFSPLISPFFAIVNVFVGYALIVYTVIPIAYWGLDVYNAKRFPIFSSHLFTAEGQKYDISAIVNDKFELDVAKYTEQGRIHLSVFFALTYGFGFATIASTLSHVACFYGREIMERYQASSKGKEDIHTRLMKRYKDIPPWWFYALLAVTLAVSLALCIFLNDQIQMPWWGLIFAGALAFVFTLPISIITATTNQTPGLNIITEYVFGLIYPGRPIANVCFKTYGYISMAQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTLLAGTINIGVAWWLLNSIENICHDDLLPEGSPWTCPGDRVFFDASVIWGLVGPKRIFGSKGNYSVMNWFFLGGALGPIIVWLLHKAFPKQSWIPLINLPVLLGATGSMPPATPLNYNAWIFFGTVFNFFVFRYRKKWWQRYNYVLSAALDTGVAFMTVLLYFSLSLENRSITWWGTNGEHCPLASCPTAKGISAPGCPPNL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10690 695 Pfam OPT oligopeptide transporter protein 29 657 IPR004813 GO:0035673
Vifa1g10690 695 PANTHER ISP4 LIKE PROTEIN 27 692 IPR004648 GO:0055085
Vifa1g10690 695 NCBIfam small oligopeptide transporter, OPT family 36 662 IPR004648 GO:0055085
Vifa1g10690 695 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g10690 695 NCBIfam OPT family oligopeptide transporter 33 659 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10690 Vifa-Chr1 1796644516 1796650178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10690 27 692 Organic Solute Cotransporters AT5G64410 80.180 0.0 1133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10690 - - gmx:100811348 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10690 1 1796644516 1796650178 Vifa1g10690 1 1796644516 1796650178 PCT
Vifa1g10689 1 1796644516 1796650178 Vifa1g10690 1 1796644516 1796650178 PCT