Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10660 ATGAGATTTTCATATCATAAGATCTTAGCCATTTTCTTCATTTGTTCAACCCTTTGTTGCATAAATAATTCCCTAGCACATCAAGATTTCCTTGATGTGCATAATCAAGCTAGAAAAGATGTTGGTGTTGGTCCACTTACGTGGAATAATACCCTTGAAGCCTATGCACAAGACTATGCAAATAAGAGAATCAATGATTGTGAACTTGAGCACTCTATGGGTCCTTTTGGTGAGAACCTTGCTGAGGGTTATGGTGAAATGAAAGATGCTGATGCTGTCAAGTTTTGGCTAACCGAAAAACCTAACTATGACTATGACTCAAACTCTTGTGTTAATGATGAGTGTTTGCATTATACTCAAATTGTTTGGCGTGATACGGTTCATCTTGGTTGTGCTAAGGCCAAATGTAAGAATGGTTGGGTTTTTGCCATTTGTAGCTATTCACCACCTGGCAATGTTGATGGACAACGACCTTATTGA 480 0.3833 MRFSYHKILAIFFICSTLCCINNSLAHQDFLDVHNQARKDVGVGPLTWNNTLEAYAQDYANKRINDCELEHSMGPFGENLAEGYGEMKDADAVKFWLTEKPNYDYDSNSCVNDECLHYTQIVWRDTVHLGCAKAKCKNGWVFAICSYSPPGNVDGQRPY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10660 159 Pfam Cysteine-rich secretory protein family 31 147 IPR014044 -
Vifa1g10660 159 SUPERFAMILY PR-1-like 27 159 IPR035940 -
Vifa1g10660 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Vifa1g10660 159 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Vifa1g10660 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Vifa1g10660 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Vifa1g10660 159 FunFam Putative pathogenesis-related protein 1 24 159 - -
Vifa1g10660 159 CDD CAP_PR-1 28 159 - -
Vifa1g10660 159 Gene3D CAP 25 159 IPR035940 -
Vifa1g10660 159 SMART SCP_3 25 155 IPR014044 -
Vifa1g10660 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 29 156 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10660 Vifa-Chr1 1791843858 1791844337 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10660 K13449 - gmx:100527778 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10660 1 1791843858 1791844337 Vifa1g10660 1 1791843858 1791844337 ECH
Vifa1g10653 1 1790540049 1790540495 Vifa1g10660 1 1791843858 1791844337 PCT