Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10653 ATGGTTAATCAGTTTGTAGAAGGGCAAGATTCACCAGCAGACTATCTAAAAGCACACAACGCGGCAAGATCGGCAATTACCAAAGTTAAAATTCCCGATCTTGTTTGGGACAACAAAGTTGCTGCTTTTGCAAATAACTATGCTAACCAACGGAAGGATTGTCAATTGGTCCACTCTGGTAGTGACCGATACGGAGAAAATATCGCAATGGGCGGCGGTGAGATGTTTGGCACAGATGCTGTGACGATGTGGGTTGGTGAGAAGCCCTACTATGATTATAACAGTAATTCATGTGCTGATGGTCAAATGTGTGGCCATTATACACAAGTTGTTTGGAAAAACACAGTAAGAATTGGATGTGCTAAAGTGAAATGTGATAATGGAGGAACTTTTATTACTTGCAATTATGATCCTCCTGGCAACTATATTGGTGAGAGGCCATATTGA 447 0.4139 MVNQFVEGQDSPADYLKAHNAARSAITKVKIPDLVWDNKVAAFANNYANQRKDCQLVHSGSDRYGENIAMGGGEMFGTDAVTMWVGEKPYYDYNSNSCADGQMCGHYTQVVWKNTVRIGCAKVKCDNGGTFITCNYDPPGNYIGERPY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10653 148 Gene3D CAP 10 148 IPR035940 -
Vifa1g10653 148 ProSitePatterns CRISP family signature 2. 131 142 IPR018244 GO:0005576
Vifa1g10653 148 SUPERFAMILY PR-1-like 10 148 IPR035940 -
Vifa1g10653 148 PRINTS Allergen V5/Tpx-1 family signature 131 144 IPR001283 -
Vifa1g10653 148 PRINTS Allergen V5/Tpx-1 family signature 104 120 IPR001283 -
Vifa1g10653 148 PRINTS Allergen V5/Tpx-1 family signature 34 52 IPR001283 -
Vifa1g10653 148 PRINTS Allergen V5/Tpx-1 family signature 80 93 IPR001283 -
Vifa1g10653 148 PRINTS Venom allergen 5 signature 34 52 IPR002413 -
Vifa1g10653 148 PRINTS Venom allergen 5 signature 103 122 IPR002413 -
Vifa1g10653 148 SMART SCP_3 10 144 IPR014044 -
Vifa1g10653 148 ProSitePatterns CRISP family signature 1. 105 115 IPR018244 GO:0005576
Vifa1g10653 148 FunFam Putative pathogenesis-related protein 1 9 148 - -
Vifa1g10653 148 Pfam Cysteine-rich secretory protein family 16 136 IPR014044 -
Vifa1g10653 148 CDD CAP_PR-1 12 148 - -
Vifa1g10653 148 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 14 145 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10653 Vifa-Chr1 1790540049 1790540495 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10653 K13449 - zju:107427101 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10653 1 1790540049 1790540495 Vifa1g10653 1 1790540049 1790540495 ECH
Vifa1g10653 1 1790540049 1790540495 Vifa1g10660 1 1791843858 1791844337 PCT