Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09835 ATGAAGGGTCTCTTTAAGCCAAAGCCACGCACACCTATTGATATTGTGCGACAAACCACAGATCTTCTTCTATTCTTCGATCGCAGCAACGAAATCCGTGATAGCAAGCGGGAAGAAAAACAAATGGCTGAGCTGTGTAAAAACATCAGGGAGCTAAAGTCGATCCTTTATGGAAGTAGTGAATCTGAACCAGTCTCGGAAGCTTGTGCGCAGTTGACTCAGGAGTTCTTTAAGGAGAACACACTGCGACTGCTTATCAAATGTATTCCAAAATTGAATTTGGAGGCCAGGAAAGATGCCACTCAAGTAGTTGCAAATTTACAAAGGCAACCGGTTCAGTCTAAATTGATCGCATCTGATTACCTGGAGAAAAACATGGATCTTATGGATGTTTTGATAGCTGGCTATGAAAACACGGATATGGCTTTACACTATGGTGCGATGCTCAGGGAGTGTATAAGGCACCAGATTGTTGCAAAATATGTTCTGAACTCACCTCATATGAAGAAGTTCTTTGATTATATTCAACTTCCAAATTTCGACATTGCTGCAGATGCTGCAGCAACTTTTAAGGAACTCATGACCCGTCATAAATCTACTGTAGCTGAATTTCTTTCTAAGAATTATGAATGGTTTTTTGCAGATTATAATTCCAAGCTGTTGGAATCTTCCAATTATATTACAAGACGGCTAGCTGTTAAGTTGCTGGGAGATATGTTACTTGATCGTTCAAATTCATCCGTAATGACCCGATATGTGAGCTCAAGAGAAAACTTGAGGATTTTGATGAATCTTCTAAGAGAGTCAAGCAAAAGCATACAGATAGAAGCATTTCACGTTTTCAAGCTATTTGCTGCTAACCAAAATAAACCGCCTGATATTATCAGCATTTTTGTTGCAAACAAAAGTAAAATGTTGAGACTATTGGATGAATTCAAAATTGATAAAGAGGATGAACAGTTTGAAGCTGACAAAGCTCAAGTGATGGAGGAAATTGCTGCTCTTGAAGCTTAG 1014 0.3895 MKGLFKPKPRTPIDIVRQTTDLLLFFDRSNEIRDSKREEKQMAELCKNIRELKSILYGSSESEPVSEACAQLTQEFFKENTLRLLIKCIPKLNLEARKDATQVVANLQRQPVQSKLIASDYLEKNMDLMDVLIAGYENTDMALHYGAMLRECIRHQIVAKYVLNSPHMKKFFDYIQLPNFDIAADAAATFKELMTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYITRRLAVKLLGDMLLDRSNSSVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIISIFVANKSKMLRLLDEFKIDKEDEQFEADKAQVMEEIAALEA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09835 337 FunFam putative MO25-like protein At5g47540 3 335 - -
Vifa1g09835 337 Coils Coil 318 337 - -
Vifa1g09835 337 Coils Coil 35 55 - -
Vifa1g09835 337 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 1 335 IPR013878 -
Vifa1g09835 337 Gene3D - 3 335 IPR011989 -
Vifa1g09835 337 Pfam Mo25-like 4 335 IPR013878 -
Vifa1g09835 337 SUPERFAMILY ARM repeat 10 335 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09835 Vifa-Chr1 1600387816 1600393653 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09835 K08272 - gmx:100817060 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09835 1 1600387816 1600393653 Vifa1g09835 1 1600387816 1600393653 ECH
Vifa4g05012 4 1573122941 1573128222 Vifa1g09835 1 1600387816 1600393653 PCT