Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09294 ATGGATGCAAAACCAAAACCTTCTGTAGAACCTTTGAAGTATCAGACATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGCAGAAAAAAAGTAAAGAAAGTTTTGAAGCGCATTGATGGTGTTTTCACTGCAACAATCGATTCACAACAGCATAAAGTAACAGTTACTGGAAATGTTAATGTTGAGATACTTTTAAAGAAGTTGGTCAGAGCTGGGAAACCTGCCGAGATTTGGCCGGAGAGTGACGACGGGAAGGGAAAAAACTCCGGCAAAGAGAAGAAGAAGAAGAATGAAAATGAAAACGAACCAAAAGAAACACAAAGCTTGCAAAACAAGGGAACTGAAAGTGGTAACAAGTGTGAAAATGAAACCAAAAACAAGAACAAGTACTCTAAAACCAGTGCCGGTGAGTTGCCGGTGAAGTCTCCGGTAAACAGCAACGTTACTCCGGTAGGTGGTGGAGAGGGTTCTGATAATAAGAAGAAGAAAAAGAAAGATGGAAACGGAAACGGAAATGGAAACAATGGTTTGAGCTCAGTAGCTAAGAATGGACCATCACACACTGGATTCCAATTCCAGAATCTTGATCAAGGTATGGCCCACCAAGTGAATCTCAGCCCTACACGTCAGCAATCGTTTTTCTATCCATCAGAAACATGTTACCCTCCCATGGCTTATGTGTCATCAGCTTACAATAGGTTATATCCTATGGGAAGAGTTTGTGATCCTTCTTATCATGTTCCATCTTTACCCTACACGTGTCCTTATAGCCTAGTTAATCAATATGGAACTTATCAACTTCAATCAGCACCCTCGGTTTCTTTTGAGTTTTTTAGTGATGAAAATGCTAATGGATGTTCCATTATGTGA 873 0.4021 MDAKPKPSVEPLKYQTWFLKVSIHCEGCRKKVKKVLKRIDGVFTATIDSQQHKVTVTGNVNVEILLKKLVRAGKPAEIWPESDDGKGKNSGKEKKKKNENENEPKETQSLQNKGTESGNKCENETKNKNKYSKTSAGELPVKSPVNSNVTPVGGGEGSDNKKKKKKDGNGNGNGNNGLSSVAKNGPSHTGFQFQNLDQGMAHQVNLSPTRQQSFFYPSETCYPPMAYVSSAYNRLYPMGRVCDPSYHVPSLPYTCPYSLVNQYGTYQLQSAPSVSFEFFSDENANGCSIM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09294 290 Pfam Heavy-metal-associated domain 21 72 IPR006121 GO:0046872
Vifa1g09294 290 Gene3D - 13 78 - -
Vifa1g09294 290 MobiDBLite consensus disorder prediction 77 193 - -
Vifa1g09294 290 ProSiteProfiles Heavy-metal-associated domain profile. 14 77 IPR006121 GO:0046872
Vifa1g09294 290 MobiDBLite consensus disorder prediction 77 106 - -
Vifa1g09294 290 MobiDBLite consensus disorder prediction 132 154 - -
Vifa1g09294 290 CDD HMA 19 77 IPR006121 GO:0046872
Vifa1g09294 290 SUPERFAMILY HMA, heavy metal-associated domain 13 80 IPR036163 GO:0046872
Vifa1g09294 290 MobiDBLite consensus disorder prediction 170 193 - -
Vifa1g09294 290 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 10 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09294 Vifa-Chr1 1471826702 1471827937 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09294 - - psat:127115794 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09294 1 1471826702 1471827937 Vifa1g09294 1 1471826702 1471827937 ECH
Vifa4g03951 4 1265004395 1265005614 Vifa1g09294 1 1471826702 1471827937 PCT