Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09285 ATGGAATATAGAACACTAGAACTCAACATAATTTCTGCAAAAGATCTCAAAGATGTTAATCTCTTCTCCAAGATGGACGTATACGCCGTCGTTTCAATCACCGGCGATCCTATCAATCCTCAAACCGCCACCACTCATATCCACCGCAACGGCGGAAAAAACCCTACCTGGAATTTTTCTGTCAAATTCACTGTCAACGAATCTCTTGCTAATCAGAATCGTCTCTCTCTTGAAATCAAACTCATCTCCGATCGCGCCGTCGGAGATACTGTGATCGGTACCGTTCATATATCTCTCAAGGAACTTCTTGATAACCCTTCCGGTGATTCTTTAAGGCAGGTTGGTTATCAGGTTAGAACAACCTCGGGGAAATCGAAGGGGACGTTGAATCTTTCCTACAAATTCGGGGAACATGTCGGGGCTCCGGCGATGAAGTCAGAGGTGAAAAATGAAAAGGTGAAAGGGAAACATGAATCGGAACCAGTGATGGCTTATCCTCCACCGGGAGTGGCGGCGGGGTCTAGTTCTGTTCCGTACGCTGGATATGGATATCCTCCACCGCAACAAGCTGGATATGGGTATCCACCACAACAACAACAACCGGGTTACGGATATCCACCACCCCAACAACCGGGTTATGGGTATCCACCGCAGCAGCAACCTGGTTATGGGTATCCACCGCAGCAGCAACCTGGTTATGGATATCCAGGGGCACAGAAACCTAAAAAGAATAAATTCGGAATGGGTTTGGGAGCAGGGTTGCTTGGAGGTGCATTAGGTGGGATGTTAATTGGTGATATGGTTTCTGATGCTGGTGCATATGATGCTGGATATGATGATGGCTTTGATGCTGGTGGTTTTGATTTCTAG 870 0.4701 MEYRTLELNIISAKDLKDVNLFSKMDVYAVVSITGDPINPQTATTHIHRNGGKNPTWNFSVKFTVNESLANQNRLSLEIKLISDRAVGDTVIGTVHISLKELLDNPSGDSLRQVGYQVRTTSGKSKGTLNLSYKFGEHVGAPAMKSEVKNEKVKGKHESEPVMAYPPPGVAAGSSSVPYAGYGYPPPQQAGYGYPPQQQQPGYGYPPPQQPGYGYPPQQQPGYGYPPQQQPGYGYPGAQKPKKNKFGMGLGAGLLGGALGGMLIGDMVSDAGAYDAGYDDGFDAGGFDF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09285 289 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vifa1g09285 289 MobiDBLite consensus disorder prediction 188 240 - -
Vifa1g09285 289 SMART C2_3c 5 111 IPR000008 -
Vifa1g09285 289 MobiDBLite consensus disorder prediction 146 167 - -
Vifa1g09285 289 CDD C2_SRC2_like 5 131 IPR044750 GO:0006952
Vifa1g09285 289 PANTHER INGRESSION PROTEIN FIC1 1 266 - -
Vifa1g09285 289 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 138 IPR035892 -
Vifa1g09285 289 MobiDBLite consensus disorder prediction 200 224 - -
Vifa1g09285 289 Pfam C2 domain 5 106 IPR000008 -
Vifa1g09285 289 Gene3D C2 domain 2 164 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09285 Vifa-Chr1 1469505813 1469506739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09285 - - mtr:25488140 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09285 1 1469505813 1469506739 Vifa1g09285 1 1469505813 1469506739 ECH
Vifa4g03947 4 1263627017 1263627697 Vifa1g09285 1 1469505813 1469506739 PCT