Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08945 ATGGGAGGGTGTTTTTCTTCGAGATCATCATCGATGTCGAAGAAAATTCGTTTGGTTCATCTAAGTGGCTACGTAGAGGATTTCGAGCAACCGATTTCAGTAAACCAAGTAATCACTACTAGAAATCCACCAACTCATTTTGTTTGTACCTCTCTTCAACTTGTTTCATCTTGTTCTAAACCATTGAAAGGAGATACACAGCTCCAACCTGGAAATGTTTACTTCCTGCTACCTTATTCAATTCTACAAGCTGATGTTTCGCCCGTGGACTTGGCTTCGCTTGCGAAAAGGCTCACCGCGAAGGCGAAGACTAGTAAATATGAAGGTAAAAAGTCATTGAAAGGTGTTCCTTTGTCAAACCAAGATGGTTTGAGCAGTATTTGGAGTTCACCGTCGATGAGTCCTGGAAGAGTCGCCGGGGTTGAGCAATTTGGTATGGCGTATGGTGGACGGAGCACGTGTAGAGGGCGGTTATGGAGACCTCTGTTGGATACTATTAGAGAGAAGTCATTCAATAGGAGTAGTGAATCAGATTTGAAAGATAATCAATGA 552 0.4275 MGGCFSSRSSSMSKKIRLVHLSGYVEDFEQPISVNQVITTRNPPTHFVCTSLQLVSSCSKPLKGDTQLQPGNVYFLLPYSILQADVSPVDLASLAKRLTAKAKTSKYEGKKSLKGVPLSNQDGLSSIWSSPSMSPGRVAGVEQFGMAYGGRSTCRGRLWRPLLDTIREKSFNRSSESDLKDNQ 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08945 183 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 168 - -
Vifa1g08945 183 Pfam PADRE domain 1 168 IPR025322 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08945 Vifa-Chr1 1418750533 1418751084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08945 - - gmx:100810460 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08945 1 1418750533 1418751084 Vifa1g08945 1 1418750533 1418751084 ECH
Vifa4g04453 4 1407898366 1407898956 Vifa1g08945 1 1418750533 1418751084 PCT