Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08944 ATGATATCTTCACACATGGATATTGCAAATAGCATTGTGTTAACGAAGCCATTCACGTTAAGAAGTGATTCGGATTCAGAGGAAAATTACAGTGCTCCCAATCTTTTACAGCGTATATTAAGTCTTCTTAAGAATGTGCGGCCAGGATCTGATCTCACACGTTTTCAGCTACCACCATTATTCAACTTTCCAAAGTCACAACTTCAATGCTATGGTGAATCAGTCTACTCCACATCTTCAGATTTACTAACCAAATGCAACACTGGACTAACTCCAATTGAAAGACTCATATCTGTCATAACATATAGCATATCAACCACGCGCCCTGCGCTTTTCGGCCTCGCTCCATACAATCCCGTTCTCGGCGAGACTCATCATGTTTCCAAGGGAAACCTCAATGTTCTACTAGAACAGGTTGCACACCATCCTGCTGTTTCTGCTCTCCATGCAACGGATCAGAAGGAAAACATGGAAATGATATGGTGTCAGTATCCTGTCGCGAAGTTTAATGGTACTTCGGTGGAGGCACGGGTGCACGGGAAGAGGAAACTGAAGCTTCTTAATCATGGAGAGACATATGAGACGAATTCTCCGAATTTGTTCATAAGGATTCTTCCGGTTCCGGGAATTGATTGGGTTGGGAATGTGAATATCAGGTGTGTGGAAACAGGTCTTGCGGCGGAGTTATGTTATATAAGTCAGTCTTTCTTTGGATTTGGTGGAAGTAGAAGAGTCATAAAGGGGGAGATTGTTGATTCATTGACATCAAAGATTTTATATAAAGTTAATGGTCATTGGGATAGTACTGTAACATTGAAGGATGCAAATAATGGAGAAGAAAGAGTGATATATGATGCTAAAGAAGTCATTTCAAGGCTTCAAACTCCCACCGTTAAGGATGCAGAGAGTGTGTGGCAAACTGAATCAGCTCTGATATGGAGTAAGGTAAGCCAAGCCATCTTAAACAAAGACTGGGAAAAAGCAAGAGAAGCAAAGAAAAGTGTGGAAGAAAAACAAAGGGAGGAATTGAGAGAAAGAGAGTCCAAACGAGAAACTTGGGTTCCTAAACATTTCATTATGTCACAAAGCAAAGAAGGTGATTGGGATTGTTTACCCATTCAAAACTGGGTTCCACCCTCTCCTATTGTTACATTGTAA 1158 0.4111 MISSHMDIANSIVLTKPFTLRSDSDSEENYSAPNLLQRILSLLKNVRPGSDLTRFQLPPLFNFPKSQLQCYGESVYSTSSDLLTKCNTGLTPIERLISVITYSISTTRPALFGLAPYNPVLGETHHVSKGNLNVLLEQVAHHPAVSALHATDQKENMEMIWCQYPVAKFNGTSVEARVHGKRKLKLLNHGETYETNSPNLFIRILPVPGIDWVGNVNIRCVETGLAAELCYISQSFFGFGGSRRVIKGEIVDSLTSKILYKVNGHWDSTVTLKDANNGEERVIYDAKEVISRLQTPTVKDAESVWQTESALIWSKVSQAILNKDWEKAREAKKSVEEKQREELRERESKRETWVPKHFIMSQSKEGDWDCLPIQNWVPPSPIVTL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08944 385 Gene3D - 305 375 - -
Vifa1g08944 385 Pfam Oxysterol-binding protein 41 366 IPR000648 GO:0008289
Vifa1g08944 385 Gene3D - 120 300 - -
Vifa1g08944 385 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 39 359 IPR000648 GO:0008289
Vifa1g08944 385 SUPERFAMILY Oxysterol-binding protein-like 37 371 IPR037239 -
Vifa1g08944 385 FunFam Oxysterol-binding protein-related protein 4C 120 297 - -
Vifa1g08944 385 FunFam Oxysterol-binding protein-related protein 4B 305 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08944 Vifa-Chr1 1418746206 1418749461 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08944 K22285 - gmx:100783943 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08944 1 1418746206 1418749461 Vifa1g08944 1 1418746206 1418749461 ECH
Vifa4g04449 4 1407499839 1407514644 Vifa1g08944 1 1418746206 1418749461 PCT