Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08692 ATGTCTGGAGTTACGAAGGAGGAAGAGTCGGGTAGTCCTAGTTGGGGTGCTTCGTTTTTAATGCAGACAACGGAAGATGTGGCTAAAGCGGTCACTGCTGCTATGAATACTCCAAGGCCGTCTGTTATTTATTCGTCGAAAAATGAACAGGGTGGTAGTCAACTTCAAAGGCTGCAGTATCAAGTTACGAAAATGATAAAAGGGTTTTCTCGTCCTCCTGAAGTTAAATATGCGAATTATAATCCGGAAATCTTGACGAGTCAGAAGCGTCAATGGGCTGCTAACTTTCATTTGCAGTACAATGATCACAAGTCTTGGAAGGAGCCAACAAAGTTGTTTGAAAGTATGGTGGTTGTTGGGCTTCATCCTAATTCTGACATTCAGGCGCTGCAAAGGCAATATTTGGTGAGGAGGTCCGAAGGTTCTGGTAAATTGAGAAGTGCACTTGGTTATCAAAATCAATCCCGTGTGGAGCCAAATGTTGAACCTCAGGTCTTATTTGTTTACCCTCCGGAAAAGCAGCTACCTCTTAAAGAAAAAGATCTTCTTTCTTTCTGTTTCCCTGGAGGTCTTGAGGTTAATGCTGTTGAGAAAACCCCTTCCATGAGTGAATTAAATGAAATTCATTTCGGACAGGAACATTTTAAACAAAGGGATCTGTCATTTGTATTTAGGTTACAGGGTGCTGATAATTCAACACTTTATGGGTGTTGTGTCTTAGTTGAAGAGCTAGTGCATAAACCCTCTGGATTGCTTTCCATGATTACGGTTAAGCAGTCATCTAACTCTTTGAGACGCCATATATTAACCACACAAAGATGTTACTGCATTCTCTCAAGGCTCCCATTTTTTGAGTTGCACTTTGGTGTATTGAACAGCATCTTCATGCAAGAAAGGCTGGAGCGGTTGACAAGAAGTGTCGAGTATTTTAATGAATTCCCTGAAGGTAGTTATGAGGGAGAAAACTTGGAAGGAAATTCAGAGAGTCTTGTGGTGAATGATAGGCTTACCAAAGACAAACTTGATGAGAGTCCAAGAATTTCTCAATCAAACCTAAAAAATTCCCAACACAACAACATCGAGGATGATAGTAATCATCAAAAGAAACAAATGGTTAATGAGGAGATGCATACACTTAAAGAGGGAGCAGATGATGACAATATTGTGTCTGTTCATCCTGAAACTGATGGAGAAATTGTCAAAGGAGTGTCTAGCCTTACAATTGCTGAAGATAGTAATACATATGGCAATGCTTTGGCAACAAACAAACAGTCAGAAGATAGGCGTTTACCAAATGCTATTTTGCCCCTCCTTCGGTATAACCAGTATGAAAGCTCCGAATCTTCCTGCAGTTTTCAAGGTTCACCTAGTGAAGATAGAAATTTCAGGAGTGATGCTGATGATACTGAGACAGAAGAGGCTTCATTCTCAGGACAAGAAGATTTAAATGACCTACATGAGATTCTTGAATGGGCCAAGACTAATAATTGTGGACCGTTACAAATTATAAGTGAGTATTATCGTTTTAGTTGTCCTACAAGGGGATCGACACTTATCTTTCATCCTTTGGAGCACCTACATTCCTTGGAATATCACAGGCCAGATGAGAATGCTCTTTATCTGTCTGGTTCACTTATTGGTTTGAAATCTTGTAGTACAGGTCTGGGATTAGCCGAGGCACAAAATTGTCTTCTGGTTGCAGAGGAGGCAACTGCATTATCTATATGGGCTGTAGCGTGCTTATGTGGTACCTTGAGACTTGAACATGTGTTAACATTCTTTGCCGGAGCTCTACTGGAGAAGCAGATTGTAGTTGTCTGCTCTAATTTGGGAATCTTATCTGCATCAATTCTATCAGTTATTCCACTAATCCGACCCTACCAATGGCAAAGCTTGCTAATGCCGGTTTTACCAAATGACATGCTTGACTTTCTGGACGCTCCTGTTCCTTACATAGTTGGTGTTAGGCATAAGACAAATGAAGTTCAGACAAAGTTATCCAATGTTATTCTGGTTGATGCCAACAGAAACCAGGTGAAGTCACCGACAATACCTCAATTGCCAAGACAAAAAGAGCTAATGTCTTCTTTACGTCCTTATCATGCAACTCTTGTCGGAGAAAGTTACTTGGGTAGGAGAAGGCCGGTGTATGAATGCACGGAAATGCAGTTAGAAGCTGCCAAGGGGTTCTTATCTGTGTTAAGATCTTATTTGGATTCCCTATGCTGTAACATCCGTTCACATACAATAACCAATGTACAATCGAATGACGATAAGGTATCCTTGCTTTTGAGGGAGAGTTTCATTGACTCATTCCCTTATCGCGATCAGTCTTTCATGAAGCTTTTCGTGGATACACAACTGTTCTCTGTACACACAGATCTTGTGCTCTCTTTCTTCCAAAAGGAATAG 2412 0.408 MSGVTKEEESGSPSWGASFLMQTTEDVAKAVTAAMNTPRPSVIYSSKNEQGGSQLQRLQYQVTKMIKGFSRPPEVKYANYNPEILTSQKRQWAANFHLQYNDHKSWKEPTKLFESMVVVGLHPNSDIQALQRQYLVRRSEGSGKLRSALGYQNQSRVEPNVEPQVLFVYPPEKQLPLKEKDLLSFCFPGGLEVNAVEKTPSMSELNEIHFGQEHFKQRDLSFVFRLQGADNSTLYGCCVLVEELVHKPSGLLSMITVKQSSNSLRRHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLERLTRSVEYFNEFPEGSYEGENLEGNSESLVVNDRLTKDKLDESPRISQSNLKNSQHNNIEDDSNHQKKQMVNEEMHTLKEGADDDNIVSVHPETDGEIVKGVSSLTIAEDSNTYGNALATNKQSEDRRLPNAILPLLRYNQYESSESSCSFQGSPSEDRNFRSDADDTETEEASFSGQEDLNDLHEILEWAKTNNCGPLQIISEYYRFSCPTRGSTLIFHPLEHLHSLEYHRPDENALYLSGSLIGLKSCSTGLGLAEAQNCLLVAEEATALSIWAVACLCGTLRLEHVLTFFAGALLEKQIVVVCSNLGILSASILSVIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVRHKTNEVQTKLSNVILVDANRNQVKSPTIPQLPRQKELMSSLRPYHATLVGESYLGRRRPVYECTEMQLEAAKGFLSVLRSYLDSLCCNIRSHTITNVQSNDDKVSLLLRESFIDSFPYRDQSFMKLFVDTQLFSVHTDLVLSFFQKE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08692 803 SMART DENN_cls 270 677 IPR001194 -
Vifa1g08692 803 Pfam DENN (AEX-3) domain 566 675 IPR001194 -
Vifa1g08692 803 MobiDBLite consensus disorder prediction 340 367 - -
Vifa1g08692 803 Gene3D - 574 739 IPR043153 -
Vifa1g08692 803 SMART uDENN_cls 109 242 IPR005113 -
Vifa1g08692 803 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 45 799 - -
Vifa1g08692 803 MobiDBLite consensus disorder prediction 446 478 - -
Vifa1g08692 803 Gene3D - 102 315 - -
Vifa1g08692 803 ProSiteProfiles Tripartite DENN domain profile. 147 803 IPR037516 -
Vifa1g08692 803 Pfam uDENN domain 163 240 IPR005113 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08692 Vifa-Chr1 1371632630 1371644419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08692 - - gmx:100782148 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08692 1 1371632630 1371644419 Vifa1g08692 1 1371632630 1371644419 ECH
Vifa4g04327 4 1367183909 1367194952 Vifa1g08692 1 1371632630 1371644419 PCT