Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07982 ATGGCGCAGAACAGATTCGTCATTGAAGTCGAAAAAGCAAAGGAAGCCAGTGATGGCAGACCTTCTAGAGGACCTGCGTACCGTAGCATCTTCGCTAAGGATGGATTTCCGGCTCCTGTTCCAGGTCTTGATAGTTGCTGGGACGTTTTCCGAATGTCTGTTGAGAAATATCCAAGTAATCCTATGCTTGGTAACAGAGAGATTGTCGATGGGAAGGCGGGCAGATACAAGTGGCAAACTTACAAGGAAGTATATGATATGGTGATCAAAGTCGGAAACTCCATCCGTAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTATGGTGCTAATTCTGCAGAGTGGATTATGAGCATGGAGGCTTGCAATGCTCATGGACTTCTTTGCGTTCCTTTATATGATACCTTAGGTTCTGGAGCCATAGAATTTATTATATCCCATGCAGAAGTCTCAATTGCATTTGCAGAAGAAAAGAAAATACCCGAGCTGTTGAAGACATTTCCAAATGCAACCAAATATCTCAGGACAATTGTGAGCTTCGGAAAGGTTACTCCTGAACAAAAGGAAGAAGTTGAAAAGTTTGGATTGGCAATATATTCATGGACTGAATTTTTAAAATTGGGAGAAAATCAGAGTTTTGATCTACCTGTAAAAAACAGAAGCGATATCTCTACCATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTATTGATATCCAATGAGAGTATTATTACCCTATTAGCTGGGGTTAAGCGGTTATTGGAGAGTGTCGATGAAAAATTGACTGAGAAAGATGTGTACTTATCATACCTTCCTCTCGCACATATCTTCGATAGGGTCATTGAAGAGACATTTATATGGCATGGTGCCTCGATAGGCTTCTGGCGTGGGGATGTTAAATTGTTAATCGAGGACCTCGGAGAACTAAAACCAACTATTTTTTGTGCTGTACCCCGTGTACTTGATAGAGTGTACTCAGGTTTGACACAGAAAATTTCTTCTGGAGGCTTCCTGAAGAAGACACTATTCAACTTTGCTTATTCATATAAAATGAATAACATGAAGAAAGGGCATAAGCATGCAGCAGCATCTCCAATTCTTGACAAAATTGTGTTCGATAAGGTAAAGCAAGGTTTAGGGGGTAGAGTACGCGTCATTTTGTCTGGAGCAGCACCTCTATCTGTGCATGTGGAAAGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAAGGATATGGTCTGACCGAAACCTGTGCGGGAACCTTTGTTTCATTACCAAATGAACTAGGTATGCTTGGAACAGTGGGTCCTCCTGTACCAAATGTAGATGCGTGCCTGGAATCTGTCCCTGAAATGGGTTACGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTGTAAAGGGTGATCCCTTGTTTTCGGGGTACTACAAACGTGAAGACCTCACAAAAGAGGTTCTGATTGATGGATGGTTCCATACAGGGGACATTGGAGAATGGCAGCCTAATGGAAGCATGAAGATTATTGATCGGAAGAAGAATATATTCAAGCTTTCACAAGGAGAATATGTCGCAGTTGAAAACCTGGAGAATATTTTTAGCCAAGTTCCTTCTATTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCCGTTGTTAACCCCAGAAAGCAGGCACTTGAAGATTGGGCAGAAGAAAATGGTATATCAATGGACTTCAATTCTCTGTGTGAAGATTCTAGGGCAAAAAGTTACATACTTGAAGAGCTCTCAAAGCTTGGAAAGGAAAAGAAGTTGAAAGGATTTGAGTTTATAAAAGCAGTTCATCTTGACCCAGTTCCATTTGATATGGAACGTGACCTTATCACTCCAACATTTAAGAAGAAGAGGCCTCAGTTGCTTAAATACTATCAGAATGTGATTGATAACTTGTACAAAAGTGGAAATAAACCCCGTGCCTGA 1989 0.4138 MAQNRFVIEVEKAKEASDGRPSRGPAYRSIFAKDGFPAPVPGLDSCWDVFRMSVEKYPSNPMLGNREIVDGKAGRYKWQTYKEVYDMVIKVGNSIRSCGYGEGVKCGIYGANSAEWIMSMEACNAHGLLCVPLYDTLGSGAIEFIISHAEVSIAFAEEKKIPELLKTFPNATKYLRTIVSFGKVTPEQKEEVEKFGLAIYSWTEFLKLGENQSFDLPVKNRSDISTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVDEKLTEKDVYLSYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKMNNMKKGHKHAAASPILDKIVFDKVKQGLGGRVRVILSGAAPLSVHVESYLRVVTCAHVLQGYGLTETCAGTFVSLPNELGMLGTVGPPVPNVDACLESVPEMGYDALASTPRGEICVKGDPLFSGYYKREDLTKEVLIDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIFSQVPSIESIWVYGNSFEAFLVAVVNPRKQALEDWAEENGISMDFNSLCEDSRAKSYILEELSKLGKEKKLKGFEFIKAVHLDPVPFDMERDLITPTFKKKRPQLLKYYQNVIDNLYKSGNKPRA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07982 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Vifa1g07982 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Vifa1g07982 662 Gene3D - 43 516 IPR042099 -
Vifa1g07982 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 654 - -
Vifa1g07982 662 Pfam AMP-binding enzyme 54 524 IPR000873 -
Vifa1g07982 662 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07982 Vifa-Chr1 1245947974 1245957811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07982 3 658 Acyl Lipid Metabolism Gene Families AT4G23850 75.610 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07982 K01897 - gmx:100814965 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07982 1 1245947974 1245957811 Vifa6g03682 6 1210012878 1210016626 PCT