Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07010 ATGAGTGTTATTTTTGAAAAGAAAAGGGGCATTGGAAAGCTTGCTCCTTCTGATCATGGTATTGGTCATGTATACCCATATGAGACCACTTCACGGGTATATGATCTTGCTGAGCAGTTTACAAAGTTTTTTGCCACTCAACCACATGTTATGTCTGCCTCATCTGTTAAAGGCTTGATCTCCTCTAACTTGTCAGGTATTTCTTCTTCCATATGGATTTTTGATTCTGGTGCGTCGCATCATATGTCATATGATCATAAGTCTTTTTCATCTTTAAATATTGCATCATCCATGTCTGTCTTGACTGCTGATGGTACTCCTATGCCAATATCAGGTGTAGGATCTGTCTCAACAACTAAATCATCTTTATCTGATGTTTATTATATTCCTAGCCTCACTTTGAGTCTTGCTTCTGGAGAAAGATTAGGACATGCCGTAGATGGGGAACTATATGTTTTGGATGAGCTGGAAGTTCGAGATACTGCTGCCTTAACATTCATTGGTGATTTATCATCATTTCGTTTGAATTCGTCCTCAACTAGTTTTTATTTATGGCATTCTCGGCTTGGACATGTTTCTGCGTCTAGATTAAAATATTTAGCTTCTACTGGATCTTTAGGAAATTTAAAAACTAGTGATATTTCTGATTGTTGTGGTTGTAAACTTGCTAAATTTCCGCTTTGCCATTTAATAAAAGAACTTGTGAAGTATTTGAGTTTGATTCTAGAGGCTTTTTTGTGTCATTCATCTGAGTTCTCTGCTGTGAAGTTCCTAGATATGGAACTTGAAAAAGGTGGAGAAAATCCAGATAATCAAGTTGAGGCCTCAGACAGAATGAAGATGGATATGGCCTACGTCACCGATTATGTTAAAGCTAAGAATAAACCAACCCCTACAAGTGAAGTCCATAGTGCTATGAAACAAGAGATTCTACAGCTAGAGAGAAGATTACAAGATCAGTTTGAGGTTAGATGCACGTTAGAAAAAGCACTCGGATACAGATCTTCATTACTTGTCAATTCAAATGAAAAGATGGTGCCTAAGCCAGCAACAGAATTGATTAAGGAAATTGCAGTGTTGGAGTTGGAAGTTGTGTATTTGGAACAACATCTTCTCTCATTGTACCGAAAAGCTTTCGATCAAAAATTACCTTCTGTATCTCTGTTTACCAAGGAAGAAACTATAAAACATTCTCCAGCAACACCTCAAGAACCATTTGTTAAATCTTCTATGCTTGAGGTCTTAACCAAAAATGACCATGATGAGCTTGAGAATCTGCAAATGGAACATAGTAGATATGAAATGGAGAGTTTGGGGAAAGAAAAACATTTAGATTCGGGTGTTTATCGTTGTCATTCTTCATTATCGCATTGTACAGCATTTACAAGAGCATCGCCTACGGAAGAGTCTTTAACCAAAGCTTTGCGCGCCTGTCATTCGCAACCATTGTCCATGATGGAGTATGTTGAAAGCTCTTCATCAAATATAATAAGTCTTGCCGAACATCTCGACCCTCCTATGATACATCCAGGCCTTTCATCTCCCATTTCATCGTTGTCCTCAACGAGCAACTTCTCTATTGGCGATCAAGGCGATACTTGGAGCCCAAGCACCATGGTTGAAATACCATGGATTTATAAAGAGAATCAGAAATCGGGTGATACAAAAAAGTTGCTCCAAAATTACAAGTCGCTTATTTCTCGATTAGAAGAAATAGATCCTGGAAATTTAGAGCACGACGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTAGTGATGCATGCATTTTTGGCTTATGGCATTCCACAAAACAGTATGAAAAGAGTCTTTCTTCTTCTAAAGGCTGCATATAATGTTGGAGGTTATATAGTTAGCGCAGACACGATACAAAATACTATACTTCGGTGTCGAATGTCTCGCCCCGGACAGTGGCTACGTTTATTTTTTTCTTCGAAGACAAAATTCAAAACCGGAGACGGAAGACAAGCATATGCATTGAAGCATCTCGAGCCTCTTTCACACTTTGCTCTTTGTTCCGGAAACCATTCTGATCCCGCGGTTCGCGTATATGCACCAAAGAGGGTGTTTCAAGATCTAGAAGTAGCGAGGGACGAGTACATTCGAGCTACATTAGGCGTACGCAAGGACCAAAGGATACTTCTACCAAAGCTTATCGAAACATTCGCGAAGGACTCAGATTTGTGTCCTAGTGGTGTTATGGACATGATCCTAGAATCTCTACCGGAATCACTAAGGAGAAGAGTTAAGAAATGTCAACTTGCAAGATCCAAGAAGTGCATAGAATGGATTCCACATAACTTTAATTTCAGATATCTTATATCTAAGGATGTTCTAAAATAG 2367 0.3878 MSVIFEKKRGIGKLAPSDHGIGHVYPYETTSRVYDLAEQFTKFFATQPHVMSASSVKGLISSNLSGISSSIWIFDSGASHHMSYDHKSFSSLNIASSMSVLTADGTPMPISGVGSVSTTKSSLSDVYYIPSLTLSLASGERLGHAVDGELYVLDELEVRDTAALTFIGDLSSFRLNSSSTSFYLWHSRLGHVSASRLKYLASTGSLGNLKTSDISDCCGCKLAKFPLCHLIKELVKYLSLILEAFLCHSSEFSAVKFLDMELEKGGENPDNQVEASDRMKMDMAYVTDYVKAKNKPTPTSEVHSAMKQEILQLERRLQDQFEVRCTLEKALGYRSSLLVNSNEKMVPKPATELIKEIAVLELEVVYLEQHLLSLYRKAFDQKLPSVSLFTKEETIKHSPATPQEPFVKSSMLEVLTKNDHDELENLQMEHSRYEMESLGKEKHLDSGVYRCHSSLSHCTAFTRASPTEESLTKALRACHSQPLSMMEYVESSSSNIISLAEHLDPPMIHPGLSSPISSLSSTSNFSIGDQGDTWSPSTMVEIPWIYKENQKSGDTKKLLQNYKSLISRLEEIDPGNLEHDEKLAFWINIHNALVMHAFLAYGIPQNSMKRVFLLLKAAYNVGGYIVSADTIQNTILRCRMSRPGQWLRLFFSSKTKFKTGDGRQAYALKHLEPLSHFALCSGNHSDPAVRVYAPKRVFQDLEVARDEYIRATLGVRKDQRILLPKLIETFAKDSDLCPSGVMDMILESLPESLRRRVKKCQLARSKKCIEWIPHNFNFRYLISKDVLK 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07010 788 PANTHER UNCHARACTERIZED 283 785 - -
Vifa1g07010 788 Pfam Leucine-zipper of ternary complex factor MIP1 300 381 IPR025757 -
Vifa1g07010 788 Pfam Protein of unknown function, DUF547 576 709 IPR006869 -
Vifa1g07010 788 Pfam GAG-pre-integrase domain 150 224 IPR025724 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07010 Vifa-Chr1 1083371410 1083380146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07010 - - gmx:100813952 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07010 1 1083371410 1083380146 Vifa4g02512 4 761459193 761462673 PCT