Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06272 ATGAAATTCAGATTCTGCGCTTATAACAACAACTGGAGCAATCTCTATAACAAAGCGCGAAACCTAATATCTTCTTCCGCCACTTTCGCCGCCATGGCTGACCTCAACACCCTCAAAACCAAGCTCTGCATCATCGGAAGTGGCCCCTCCGCCCACACAGCCGCCGTATACGCGGCCCGTGCTGAACTCAAACCAGTTCTCTTCGAAGGATGGATGGCCAACGACATCGCTCCCGGCGGTCAACTCACCACCACCACCGACGTAGAGAATTTCCCCGGCTTCCCTGAAGGTATCCTCGGTGGCGAACTGATGGAACGGTGTCGCCAGCAATCTGTTCGGTTCGGGACTGAGATCTTCACGGAGACAGTTACCAAGGTCGATTTCTCATCTCGTCCTTTTAGGGTTTTTACTGACTCAAAATCTGTTGAGGCTGATTCGGTTATCGTCGCTACCGGAGCTGTTGCGAAACGGTTACCGTTCACTGGCTCGGGAGACGGTCCGGACGGTTTCTGGAACCGAGGGATCTCGGCTTGTGCCGTGTGTGACGGCGCGGCTCCGATCTTTAGAAACAAGCCGTTGGCGGTGATTGGTGGCGGAGACTCGGCTATGGAGGAAGCAACGTTTCTAACCAAATACGGTTCTGAGGTTTACATAATCCATCGTAGGGATACATTTAGGGCTTCGAAGATTATGCAGAGCAAGGTGGCGAACAATAGCAAAATTAAGGTGATATGGAACTCGGCGGTGGTGGAGGCTTATGGGGAAGGGGAGACCAAAAGATTGGGGGGTTTGAAGGTGAAGAATGTGGTGACAGAAGAAGTTTCTGATTTGAAGGTTTCTGGATTGTTCTTTGCCATTGGTCATGAACCTGCAACCAAGTTCTTGGATGGTCAACTAGAACTTGATTTTGATGGATATGTTGTGACTAAGCCAGGAACCACAAAGACTAGTGTTGAGGGAGTTTTTGCTGCTGGGGATGTTCAGGATAAGAAGTATAGACAAGCTATTACTGCTGCTGGCACTGGTTGTATGGCAGCTTTGGATGCAGAACATTTCCTTCAAGACATTGGTTCACAACAGGATAAGAGTGATTGA 1095 0.4968 MKFRFCAYNNNWSNLYNKARNLISSSATFAAMADLNTLKTKLCIIGSGPSAHTAAVYAARAELKPVLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGGELMERCRQQSVRFGTEIFTETVTKVDFSSRPFRVFTDSKSVEADSVIVATGAVAKRLPFTGSGDGPDGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTKYGSEVYIIHRRDTFRASKIMQSKVANNSKIKVIWNSAVVEAYGEGETKRLGGLKVKNVVTEEVSDLKVSGLFFAIGHEPATKFLDGQLELDFDGYVVTKPGTTKTSVEGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHFLQDIGSQQDKSD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06272 364 PANTHER THIOREDOXIN REDUCTASE 1-RELATED-RELATED 40 355 - -
Vifa1g06272 364 Pfam Pyridine nucleotide-disulphide oxidoreductase 41 341 IPR023753 GO:0016491
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 41 63 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 281 302 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 145 153 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 79 94 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 316 334 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 188 212 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 100 110 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 171 183 - -
Vifa1g06272 364 PRINTS Pyridine nucleotide disulphide reductase class-II signature 240 256 - -
Vifa1g06272 364 SUPERFAMILY FAD/NAD(P)-binding domain 37 352 IPR036188 -
Vifa1g06272 364 Gene3D - 160 291 IPR036188 -
Vifa1g06272 364 PRINTS FAD-dependent pyridine nucleotide reductase signature 42 61 - -
Vifa1g06272 364 PRINTS FAD-dependent pyridine nucleotide reductase signature 192 210 - -
Vifa1g06272 364 PRINTS FAD-dependent pyridine nucleotide reductase signature 144 162 - -
Vifa1g06272 364 PRINTS FAD-dependent pyridine nucleotide reductase signature 279 295 - -
Vifa1g06272 364 PRINTS FAD-dependent pyridine nucleotide reductase signature 306 328 - -
Vifa1g06272 364 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-II active site. 178 200 IPR008255 GO:0016491
Vifa1g06272 364 NCBIfam thioredoxin-disulfide reductase 41 353 IPR005982 GO:0004791|GO:0005737|GO:0019430
Vifa1g06272 364 FunFam Thioredoxin reductase 164 291 - -
Vifa1g06272 364 Gene3D - 44 352 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06272 Vifa-Chr1 979588111 979591232 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06272 K00384 - gmx:100790557 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06272 1 979588111 979591232 Vifa1g06272 1 979588111 979591232 ECH
Vifa1g06272 1 979588111 979591232 Vifa4g02156 4 662909081 662911987 PCT