Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04657 ATGGCAGCTAATCGCGTTTATGAAGCATGGAAAGGAAGTAATAAATTCCTGTTTGGAGGAAGGTTGATATTTGGGCCTGACGCAAAGTCACTGCTTATCAGTTTGGTGCTGGTCATAGTTCCAGTTATCATCTTTTGTGTATTTGTAGCAAGGCATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTGGTGGCAGTTCTATTCAATATTTATGTGTTGATACTTCTCTTTTTTACTTCTGCACGCGATCCGGGCATTATTCCAAGGAATTTACATCCGCCGGAGGAAGAGTTCCGTTATGATTCGTCTGTTTCTATTGACATTGGGGGACGGCAGACACCAAGCCTTCAGTTCCCTCGAACAAAGGAGGTAATGGTCAATGGCCTTCCTGTAAGGGTGAAGTATTGCGATACCTGTATGCTGTATCGTCCTCCTCGTTGCTCACATTGTTCCATCTGCAACAATTGTGTTCAACGTTTTGATCATCATTGCCCTTGGGTTGGCCAATGCATTGGACTGAGGAACTATCGTTACTTCTTTATGTTTGTTTCTTCGGCAACTCTTCTATGCATCTATGTCTTTTCGATCTCAGCATTTTACATCAAGGTTCTGATGGATCATAATCATGGGACAGTGTGGAAGGCAATGAAAGAATCCCCTGCATCTGTTATACTAATGGCATATTGTTTCGTCGCACTGTGGTTTGTTGGTGGACTAACTGGCTTTCATTTGTACCTTATTGGTACAAACCAGACCACCTATGAAAACTTTCGATACAGAGCAGATAGCAGGGTCAATGTTTACAATCGAGGGTGTATAAATAATTTTCTCGAAGTATTTTGTACAAAAGTGCAGCCTTCAAAAAACAATTTTCGAGCTTTTGTTCAAGAGGAGGTACAGAGGCCACCTCCTCAAGTCGTCACCCAGGAACCAGAATCAGATACAGGAGGAGATCATCGTTCTAAGGTTGAAGATGATCTAGACATCGGTGAAGACCTATTGAAGATATCACAGCGCCGGAACATTGAAGGATTTGATGAAGAAATTCGGAGTAGAGGGAGCAACGGACCTTACCATAATACTTCTGAAGGGGATTCAGTTTTGGGCTCAGATCGTCGAGCTCCAACAGTTCGATCTGACGAAAGGCACTCAAGTCGGAGGAGAAGCGAAAGCTGGGAAATTGCGCCAGATGTACTTGCCAATTCAAATGTAACTGAAACTAGAAGCTATGTTTCTTCGCGTCACTGA 1263 0.4276 MAANRVYEAWKGSNKFLFGGRLIFGPDAKSLLISLVLVIVPVIIFCVFVARHLRHEFSSYNAGYAILVVAVLFNIYVLILLFFTSARDPGIIPRNLHPPEEEFRYDSSVSIDIGGRQTPSLQFPRTKEVMVNGLPVRVKYCDTCMLYRPPRCSHCSICNNCVQRFDHHCPWVGQCIGLRNYRYFFMFVSSATLLCIYVFSISAFYIKVLMDHNHGTVWKAMKESPASVILMAYCFVALWFVGGLTGFHLYLIGTNQTTYENFRYRADSRVNVYNRGCINNFLEVFCTKVQPSKNNFRAFVQEEVQRPPPQVVTQEPESDTGGDHRSKVEDDLDIGEDLLKISQRRNIEGFDEEIRSRGSNGPYHNTSEGDSVLGSDRRAPTVRSDERHSSRRRSESWEIAPDVLANSNVTETRSYVSSRH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04657 420 MobiDBLite consensus disorder prediction 302 329 - -
Vifa1g04657 420 MobiDBLite consensus disorder prediction 379 396 - -
Vifa1g04657 420 Pfam DHHC palmitoyltransferase 139 263 IPR001594 GO:0016409
Vifa1g04657 420 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 38 306 - -
Vifa1g04657 420 MobiDBLite consensus disorder prediction 350 396 - -
Vifa1g04657 420 ProSiteProfiles DHHC domain profile. 139 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04657 Vifa-Chr1 728503670 728512140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04657 65 285 Lipid Metabolism Gene Families AT4G22750 26.754 1.73e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04657 K16675 - gmx:100795934 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04657 1 728503670 728512140 Vifa1g04657 1 728503670 728512140 ECH
Vifa1g04657 1 728503670 728512140 Vifa3g02763 3 766513568 766515616 PCT