Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02644 ATGCAGCTGCATATTTCTCCGAGTTTGAGGCATGTTACAGTGCTACCAGGGAAAGGACTTAAGGAGTTTATCAAAGTGAAAGTAGCGTCGAGGCGTCTTTCTTATAGGATGCTGTTCTATTCGCTCTTGTTCTTTACTTTTCTTCTGAGGTTTGTGTTTGTTTTAACAGCTGTGGATGGCATTGATGGCGAAAACAAGTGCTCAACCATAGGTTGTCTAGGCAAAAAGTTAGGGCCAAGGATTTTGGGTCGACGACCTGAATCATCTGTCCCAGAAGTGATATACCAAACTTTAGATGAACCTCTTGGCAATGATGAACTAAATGGAAGGTTTGATATTCCACAAACTTTAGAAGAGTTCATGATTAAAATGAAGGAAGGTCGATACGATGCCAAGACATTTGCAGTTAAACTTAGAGAAATGGTAACCCTTATGGAACAAAGGACTAGGTTGGCCAAAATCCAAGAATATCTATATCGCCACGTAGCATCGAGTAGCATACCGAAACAACTTCATTGCCTTGACTTGAGGTTGGCACATGAGCACACAAACAACGCGGCAGCGCGCCTACAGCTTCCCTCTGCAGAACTAGTTCCTGCCCTTGTTGACAATTCGTACTTCCATTTTGTCTTAGCCTCAGATAATGTTCTTGCCGCATCGGTGGTTGCAACGTCACTTGTTCGCAATTGTTTACGACCTAAGAAGGTTGTCATACACATAATTACGGACAGAAAGACTTATTATCCAATGCAGGCTTGGTTTTCACTGCATCCTTTATTACCTGCCGTGATTGAGGTCAAGGCATTGCACCATTTCGATTGGTTTACAAAGGGAAAGGTTCCTGTTTTAGAAGCAATGGAGAAAGATCAGAAGGTGCGGTCGCAGTTTCGAGGAGGTTCATCAGCTATAGTTGCAAATACCTCTGAGAAACCAAATGTTATTGCCTCAAAATTGCAAGCACTCAGTCCTAAGTACAATTCAGTCATGAACCATATCCGGATACATCTACCTGAGTTGTATCCAAGTCTTAACAAGGTGGTCTTCCTCGACGATGACATTGTGGTACAAACTGATCTTACACCTCTGTGGGACATTGGCATGAATGGAAAAGTCAACGGAGCAGTGGAAACATGCCATGGAGAAGACAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTTTCTCACCCTCTAATATCCAAAAATTTCAGTCCCGACGAATGTGCTTGGGCATATGGCATGAACATTTTCGATTTGGAGGCTTGGAGAAAGACCAATATAAGCAATACATATCATTATTGGGTTGAGCAAAATATTAAATCAGACCTAAGTTTATGGCAGCTAGGAACATTACCTCCTGGATTGATAGCATTTCATGGCCATGTCCACATTATAGATCCTTTCTGGCACATGCTGGGATTAGGATATCAGGAAAACACAAATGTTGTAGATGTTGAGAATGCTGGCGTTATCCATTTCAATGGCAGGGCAAAACCATGGCTAGACATAGCTTTTCCACAACTAAGGTCGTTGTGGACAAAATATGTCGACTTCTCAGATAAGTTCATTAAAAGCTGTCATATTAGAGCATGA 1599 0.4171 MQLHISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGENKCSTIGCLGKKLGPRILGRRPESSVPEVIYQTLDEPLGNDELNGRFDIPQTLEEFMIKMKEGRYDAKTFAVKLREMVTLMEQRTRLAKIQEYLYRHVASSSIPKQLHCLDLRLAHEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVRNCLRPKKVVIHIITDRKTYYPMQAWFSLHPLLPAVIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTSEKPNVIASKLQALSPKYNSVMNHIRIHLPELYPSLNKVVFLDDDIVVQTDLTPLWDIGMNGKVNGAVETCHGEDKFVMSKRLKSYLNFSHPLISKNFSPDECAWAYGMNIFDLEAWRKTNISNTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHIIDPFWHMLGLGYQENTNVVDVENAGVIHFNGRAKPWLDIAFPQLRSLWTKYVDFSDKFIKSCHIRA 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02644 532 CDD GT8_like_1 207 519 - -
Vifa1g02644 532 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Vifa1g02644 532 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 112 530 IPR029993 GO:0047262
Vifa1g02644 532 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 527 IPR029044 -
Vifa1g02644 532 Pfam Glycosyl transferase family 8 210 506 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02644 Vifa-Chr1 416603649 416606531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02644 1 532 Glycosyltransferase AT5G54690 78.277 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02644 K20867 - gmx:100802623 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02644 1 416603649 416606531 Vifa1g02644 1 416603649 416606531 ECH
Vifa1g02644 1 416603649 416606531 Vifa6g01765 6 673118816 673121441 PCT