Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02199 ATGATCAAAGAGTGCGAGTACCACCAAGACGAACACCGCCAACTCATCCGCCGCGTATTCGCCGGAATCCTCACCTTCGTTATCCTTATACTCCTCACAATCTTCCTAATCTGGATCATCCTCCGACCAACCAAACCACGTTTCCTCCTCCAAGATGTAACCGTCTTCGCCTTCAACCTCACCTCCACCGGAGAAACACCATCCATAACCACACCAACACCAAACACCCTAACCCTCACAATTCAAGTCACACTTACATCCTTAAACCCAAACTCAAAAATCGGCATTTATTATAATAAACTTGACGCTTACGCTTCCTATAGAGGACAACAAATCTCTCTTGCAACTGGTGTTCCAGAAACTTATCAAGGTCACCGAGACATCTCCGTTTGGTCGCCGATATTATACGGTTCGGCTGTTCCGGTTTCGCCTTTCTTGTCGGAGATTCTGCGGCAGGATCTAACTTCAGGTGGAGTTTTACTTAACATTAAAGTCAACGGGAGGGTTAAGTGGAAGGTTGGAACTTGGGTTTCTGGAAGGTACCATATTGATGTGAACTGTCCGGCGTTTATACGGGTTGCCGGCGATAAAGGTAGTGACGGGTTTGGAGTTTCTGGTCCGGCGGTTAAGTTTCAGTTATCACAAAGTTGTGTTGTTGATGTTTAA 666 0.4625 MIKECEYHQDEHRQLIRRVFAGILTFVILILLTIFLIWIILRPTKPRFLLQDVTVFAFNLTSTGETPSITTPTPNTLTLTIQVTLTSLNPNSKIGIYYNKLDAYASYRGQQISLATGVPETYQGHRDISVWSPILYGSAVPVSPFLSEILRQDLTSGGVLLNIKVNGRVKWKVGTWVSGRYHIDVNCPAFIRVAGDKGSDGFGVSGPAVKFQLSQSCVVDV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02199 221 Pfam Late embryogenesis abundant protein 84 187 IPR004864 -
Vifa1g02199 221 PANTHER OS05G0367900 PROTEIN 17 208 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02199 Vifa-Chr1 353495517 353496182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02199 13 187 EF-hand Containing Proteins AT5G21130 23.729 4.31e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02199 - - pvu:PHAVU_005G120900g 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02199 1 353495517 353496182 Vifa1g02199 1 353495517 353496182 ECH
Vifa1g02199 1 353495517 353496182 Vifa6g00362 6 149438158 149438817 PCT