Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02176 ATGGCCACACCAAACGTTGAATACACTACAAGCTTCACACACACTTTGAGAACCATGGTTAAGAAACTATGGACTAAGTTAGTAAAGTTCACAAAATTTATAAAAGAGATTGGCCAAGATGACCCTAGAAGGTTTATTCATTCCTTCAAAGTTGGATTAGCAGTTGTTTTGATTTACATTTTGCATCATTTTCGTCCCTCTTTCTATGGTTTTGGTGACAACATTATTTGGGCTGTTCTTACCGTTGTTATTGTCCTTGAACTTTCTGTGGGTGCAACACTCGGAAAAGGTTTCAATCGAATGTTGGCGACATGGTTAGGAGGCGCTCTCGGTGTTGCAAGTAATAAAATCGCCACTCTTTGTGGAGATAAGGGAAGAGTCGTAATGACTTCAATCTTTGTCTTTGTAATAGCTGAAAGAGTGACGTTTATGAGATTTTCACCAAAATTGAAGGCAAGATATGATTATGGGATGATCATATTCATCTTAACATTTTGTTTGGTATCTCTTTCGGATGTGAGTGGAAATGAACTTCTAGAAATGGCATATGAAAGGTTATTAACAATTATAATTGGAAGCTCTATAGCTATTACAGTGTGCATTTTCATATGCCCTGTTTGGATTGGAAAAGATCTTCACAATAAAATTGCTGGCAATATTGAAAAAGTTGCTGACTTTTTAGAAGGATTTGGAGATGAATACTTCAATGATACAGAGAATTCAGAAGACGAAAATAATAAAGAATTTCTTCACAAATATAAAAGAGCTCTCTCCTCAAAAAATAGTGAAGAAACAATGGCGGTTTTGGCAAGATGGGAACCTCGTCATGGCCGGTTTAGATTTCGCCATCCTTGGAAGGAATACTTGAAAATTGGAAACTTGACACGGTTTTGTGCATACAAAGTCGAAGCACTTAGTGTATATCTTCACAATTCTAAAACTCCATATGAATATCGAAGCAGGATTCAAGAACCATGCACGAATATTAGCATGGAATCAGGGAAGGCCTTAAAAGAAGCATCATTGATGATTAAGAAAATGTCAAAGTCATCAACTCCAAAAGTGCATGTTTTAAATGCAAAAAATGCTGCCGAATCTCTTAAATCTGTATTAAGAACAAATCCATGGGAAGGTGCTGATCACTTGGAGATTATACCAGCTTCTACGGTGGCATCATTGCTTATTGATACTGTGGTTTGTGTTGAGCAAATTTGTGAAGCTGTTGAAGAATTAGCATCACTTGCAAATTTTGTGCCTTCTGAGTCACTTCATAGGGGAGTGGTGCAGCCGATTTCTGATAGCGACGGTTCGGTTCATGTAGTTAGTGTTGCCTAA 1335 0.373 MATPNVEYTTSFTHTLRTMVKKLWTKLVKFTKFIKEIGQDDPRRFIHSFKVGLAVVLIYILHHFRPSFYGFGDNIIWAVLTVVIVLELSVGATLGKGFNRMLATWLGGALGVASNKIATLCGDKGRVVMTSIFVFVIAERVTFMRFSPKLKARYDYGMIIFILTFCLVSLSDVSGNELLEMAYERLLTIIIGSSIAITVCIFICPVWIGKDLHNKIAGNIEKVADFLEGFGDEYFNDTENSEDENNKEFLHKYKRALSSKNSEETMAVLARWEPRHGRFRFRHPWKEYLKIGNLTRFCAYKVEALSVYLHNSKTPYEYRSRIQEPCTNISMESGKALKEASLMIKKMSKSSTPKVHVLNAKNAAESLKSVLRTNPWEGADHLEIIPASTVASLLIDTVVCVEQICEAVEELASLANFVPSESLHRGVVQPISDSDGSVHVVSVA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02176 444 Pfam Aluminium activated malate transporter 36 412 IPR020966 GO:0015743
Vifa1g02176 444 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 18 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02176 Vifa-Chr1 349511137 349513079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02176 35 415 Miscellaneous Gene Families AT1G08440 45.455 2.33e-128 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02176 K25841 - gmx:100786663 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02176 1 349511137 349513079 Vifa1g02176 1 349511137 349513079 ECH
Vifa1g02176 1 349511137 349513079 Vifa6g00353 6 146079764 146082254 PCT