Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02009 ATGGAGACTTTATGCAACAATGGTGAAAATTCTCAGAAGAAAAGAGATGGAACGTGTTGTTCTTATAGTAAAGTAGTTAAGAACAAGCCGTTAACTAGTTCTACTGGTTCATGTTCTTCAGATTTGACAGAACAAGGAAAAACAGTTAAAGGGTCTTCATCTTCATCTCTTCCTATTCGGAAAGCTACTACTGTTTTCAAATGCAGTAAATCAGATGAAAAAGAAAATGAACCTGTTTCTCAAGTTGAGGATAAGAAAATGACTAGTCTCAGTTCAAAAGTTTCTGGAGTAGATATGATGAAGGAAAGGTTTGCAAAACTACTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGAGTTAGCACTGCTTTGGCTATCTCAAATGCTATTACTAATTTGTGCGGAACTGTGTTTGGGCAATTATGGAGACTAGAACCTGTACCTTGTGAGAAGAAAGAAATGTGGCAGAGAGAAATGGATTGGCTTCTTTGTGTTGGTGATCATATTGTTGAGTTGATGCCTTCTTGGCAAACTTTCCCAGATGGTAGTAAGCTTGAGATAATGACTTGCAGACCAAGATCAGATCTTTTTATGAATCTTCCAGCTTTGCGTAAACTCGACAACATGCTTATTGAAATTTTAGATAGTTGCACAGCAATGGAGTTTTGGTATGTGGACCAAGGAATCGTTGCACCAGATGCAGATGGGTCGGCCTCTTTTCGCAAAAGAAATCAGCGGCAAGAGGAGAAGTGGTGGCTCCCTGTACCCCGTGTCCCGCCTGCCGGTTTAAGTGAGAGTTCAAGAAAGAAGTTGAATCACAGTCGCGAATGCGCTAGCCAAATACTTAAAGCAGCCATGTCTATCAACAGCATTGCTTTAGCTGATATGGAAGTTCCTGAGTCCTATTTGGAATCCCTTCCTAAGAATGGAAGAACTTGCTTAGGCGATTTTATTTACCGATACATCACATCGGACCAATTCTCTCAAGAGTGCCTGCTTGATTGCATAGACATCTCCAACGAACATGTTGCATTAGAGATTGCTAACCGTTTAGAAGCCGCGATTTTTGTATGGCACCGAAGATCTCACTCTCGACCACCACTTTATCCTGTCCGTTCGACTACAAAGTCATCTTGGGACATTGTCAAGGACTTCATAGTTGATGGAGATAAGAGAGAATTGCTTGCAGAGAGAGCACAAAATATTCTACTTTCCTTGAAGCAGCGCTTTCCGGGTTTAAGTCAAACTACATTGGATAGCACCAAGATCCAATGCAACAAGGATGTTGGAAAATCAATACTTGAAAGCTATTCAAGAGTTTTGGAGAGTATGGCGTTTAACATAGTAGCTCGTATAGATGATTTACTATATGTTGATGACTTAACCAAACATTCAGATAGGTTTCCATTGGCTCCAATGGTTAACATGGTTTCTATTGGAGAGTCAGGGGAAATCGGGAGCACCAACGTGCGTCAAATACTCCAGGACTACGAGAGAGGGCGTAAAAAGGTTTCACAACAATTATTAGTGTCTGTCTCAGACACTCGACACAACAAAACAAAATTTGGCACACCTAGTTGTTCACCTGTGTCACTAATTAGTCCTTCAAGGGGAGAGACAATAACTCCTTTTATCCGCAACAAAAACGACATGATTAAGTCTCAACGACGCGGCTTCGGTGTGAAGAGAGTGTTGTCGAATTATCTTGGAGCAGAGATGAAAGCAGCAAAGGTGTTCAGCAACTCAATAACTCATGAGGTGAATAGCTCAAATTCAAGTTGCAATAAAACAGAAGAACAAGAGAGGAAGAGAGAAACGTGTGCTATGAAAAACCAAACAAAATGA 1845 0.4076 METLCNNGENSQKKRDGTCCSYSKVVKNKPLTSSTGSCSSDLTEQGKTVKGSSSSSLPIRKATTVFKCSKSDEKENEPVSQVEDKKMTSLSSKVSGVDMMKERFAKLLLGEDMSGSGKGVSTALAISNAITNLCGTVFGQLWRLEPVPCEKKEMWQREMDWLLCVGDHIVELMPSWQTFPDGSKLEIMTCRPRSDLFMNLPALRKLDNMLIEILDSCTAMEFWYVDQGIVAPDADGSASFRKRNQRQEEKWWLPVPRVPPAGLSESSRKKLNHSRECASQILKAAMSINSIALADMEVPESYLESLPKNGRTCLGDFIYRYITSDQFSQECLLDCIDISNEHVALEIANRLEAAIFVWHRRSHSRPPLYPVRSTTKSSWDIVKDFIVDGDKRELLAERAQNILLSLKQRFPGLSQTTLDSTKIQCNKDVGKSILESYSRVLESMAFNIVARIDDLLYVDDLTKHSDRFPLAPMVNMVSIGESGEIGSTNVRQILQDYERGRKKVSQQLLVSVSDTRHNKTKFGTPSCSPVSLISPSRGETITPFIRNKNDMIKSQRRGFGVKRVLSNYLGAEMKAAKVFSNSITHEVNSSNSSCNKTEEQERKRETCAMKNQTK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02009 614 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 22 513 IPR038937 GO:0005085
Vifa1g02009 614 MobiDBLite consensus disorder prediction 29 55 - -
Vifa1g02009 614 FunFam Rop guanine nucleotide exchange factor 1 88 328 - -
Vifa1g02009 614 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 97 463 IPR005512 GO:0005085
Vifa1g02009 614 Gene3D PRONE domain, subdomain 1 331 468 - -
Vifa1g02009 614 Gene3D PRONE domain, subdomain 1 88 330 - -
Vifa1g02009 614 MobiDBLite consensus disorder prediction 596 614 - -
Vifa1g02009 614 ProSiteProfiles PRONE domain profile. 87 469 IPR005512 GO:0005085
Vifa1g02009 614 FunFam Rop guanine nucleotide exchange factor 14 329 468 - -
Vifa1g02009 614 MobiDBLite consensus disorder prediction 586 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02009 Vifa-Chr1 320997990 321001266 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02009 - - gmx:100796692 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01614 2 429625475 429627877 Vifa1g02009 1 320997990 321001266 ECH
Vifa1g02009 1 320997990 321001266 Vifa1g02009 1 320997990 321001266 ECH
Vifa2g01614 2 429625475 429627877 Vifa1g02009 1 320997990 321001266 PCT