Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01833 ATGGTCAATATTGAGCCTCCATCGCGTCTTAAGGGAAAAAATGTGGCGATAGTGGTTTGTTGGCTTCTTGGCAATGGGTGTCTTTTCTCTTGGAACAGTATGCTCACAATTGAAGATTACTACATGTATTTGTTTCCGAAATATCATCCATCTAGAGTGTTTACACTTGTATACCAGCCATTTGCAGTTGGAACACTTTTTCTACTTGCATATAATGAGGCAAAAGTTAATACTAGATTGAGAAATCTATTTGGATATAGCCTTTTTTTCATAGCTACTTTATTGGTGTTAATATTGGATTTAGCAACATCTGGTAAAGGAGGACTTGGAACTTTTATTGGTATATGTGTATTTAGTGGTGCCTTTGGAATTGCAGATGCTCATGTTCAAGGTGGAATGGTGGGAGATTTGTCCTACATGCATCCTGAATTCATTCAGTCTTTCCTTGCTGGTTTGGCAGCGTCCGGTGTATTAACATCTGGTTTAAGGTTAATCACAAAAGCAACATTTAACAATTCTAAGGGCAGTCTTAGAAAAGGAGCTATTCTATTCTTTGCCATATCAACATTCTTTGAATTTCTATGTGTTCTTCTCTATGCATTCGTTTTTCCTAAAATACCAATTGTGAAGTACTACCGTACAAAAGCAGCATTGGAAGGAAGCAAAACTGTTTTACAAGATCTCGCAGCGAGTGGCATCCAAACAATACCTAAAGATGACGAAGATCATACAAAAACACAAGAGAGGAAAGGAAACAAACAATTGTTATTTGAAAATATTGATTACTTACTTGACATGTTTTTAATATATGCATTGACACTATCTATTTTCCCTGGATTTCTTTTTGAAGATACTGGAGCGCATAGTTTGGGAGCATGGTATGCACTTGTGTTAGTTACAATGTATAATGTGTGGGATCTAATAGGAAGATACATTCCACTCCTAGAATTCTTAAAATTGGAGTCACGAAAGTTGATCACAATAGCAATTCTATGTCGTTTTTTACTTGTTCCTGCATTTTATTTCACCGCAAAGTATGGTGATCAAGGATGGATGATAATGTTGACATCATTCTTAGGGTTATCCAATGGTTACCTCACTGTTTGTGTTATGACATCTGCACCAAAAGGTTACAAGGGTCCAGAACAAAATGCATTGGGGAATCTGTTGGTGTTGTTTCTATTATGTGGTATATTTGCAGGGGTGACATTAGACTGGTTATGGTTGATAGGTAAAGGTTGGTAA 1245 0.3655 MVNIEPPSRLKGKNVAIVVCWLLGNGCLFSWNSMLTIEDYYMYLFPKYHPSRVFTLVYQPFAVGTLFLLAYNEAKVNTRLRNLFGYSLFFIATLLVLILDLATSGKGGLGTFIGICVFSGAFGIADAHVQGGMVGDLSYMHPEFIQSFLAGLAASGVLTSGLRLITKATFNNSKGSLRKGAILFFAISTFFEFLCVLLYAFVFPKIPIVKYYRTKAALEGSKTVLQDLAASGIQTIPKDDEDHTKTQERKGNKQLLFENIDYLLDMFLIYALTLSIFPGFLFEDTGAHSLGAWYALVLVTMYNVWDLIGRYIPLLEFLKLESRKLITIAILCRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVMTSAPKGYKGPEQNALGNLLVLFLLCGIFAGVTLDWLWLIGKGW 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01833 414 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 7 408 IPR002259 GO:0005337|GO:0016020|GO:1901642
Vifa1g01833 414 PIRSF ENT 2 412 IPR002259 GO:0005337|GO:0016020|GO:1901642
Vifa1g01833 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 122 144 IPR002259 GO:0005337|GO:0016020|GO:1901642
Vifa1g01833 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 150 170 IPR002259 GO:0005337|GO:0016020|GO:1901642
Vifa1g01833 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 349 365 IPR002259 GO:0005337|GO:0016020|GO:1901642
Vifa1g01833 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 386 410 IPR002259 GO:0005337|GO:0016020|GO:1901642
Vifa1g01833 414 Pfam Nucleoside transporter 124 408 IPR002259 GO:0005337|GO:0016020|GO:1901642
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01833 Vifa-Chr1 297909025 297916053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01833 5 412 Organic Solute Cotransporters AT4G05120 68.627 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01833 K15014 - gmx:100798899 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01833 1 297909025 297916053 Vifa1g01833 1 297909025 297916053 ECH
Vifa1g01833 1 297909025 297916053 Vifa6g00197 6 84688219 84689529 PCT