Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01356 ATGTTTTGGAAACTCGCCTCTCTTTCTGCTTCCTCTCCCGTGGAGGCTATATTAGACAAGGATAATTTCACTTTAGAAGAGCTTCTGGATGAGGAGGAAGTAATCCAAGAATGCAAGGCCTTAAACAGTCGTCTTATCAATTTTTTGAGAGATCCAGCTCAGGTTGAGCAATTGCTACGCTACATTATCGAAGAACCACCACAAGATGCTGAAAGTAAACGGACCTTCAAGTTTCCATTCATTGCCTGCGAGATTTTTACATGTGAAATTGATGTCATCTTGAAGACTTTGGTGGATGAAGAAGAGTTGATGAACTTATTATTCTCCTTTTTGGAGCCTAATCGTTCCCATAGTGCCTTGTTGGCTGGCTACTTTAGCAAGGTTGTTGTTTGCCTAATGATTCGAAAGACAGTGTCACTTATGAATTATGTTCAGGCCCATCAGAATGTTTTTCGCCAATTGGTTGATTTGATTGGAATCACATCCATTATGGAGGTTTTGGTTCGATTAGTAGGCGCTGATGACCATGTGTATCCCAATTTTATTGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTCGAAATGATTGTTGATAAATTAAGTCCATCTTGCCCCCCTGAAGTTAATGCCAATGCAGCTGAAACATTATGTACAATAACACGAAATGCCTCATCTACTCTAGCAATTAAATTATCAAGCCCAAGTTTTGTCGCAAAAATTTTGGGCTATGCATTGGAAGATTCACAATCGAAGTCTACCCTTGTGAACTCACTTTCCGTGTGTATTTCCTTGTTGGACCCGAAAAGATCTAATGTACCATCTCCCCTTTTTCATTCATTCCGAAGTCAACACATGTATGAGCCACATATTCCTGTAAAGCCAGAGACTATTAGTGCAATGTTCCCTAAACTCAGCGACTTGCTAATGCTTTTGAGTGTGTCGTCCGATGAGAAAGTATTGCCTACAACATATGGAGAATTGAGACCTCCACTTGGGAAGCATAGATTAAAGATTGTTGAGTTCATTGCAGTCCTCTTAAAAACCGGAAATGAGGCTGCAGAAAAAGAAATGGTCAACTCGGGAACCATTAAACGAGTTATTGATCTTTTTTTTGAGTATCCATATAATAATTCATTACACCATCATGTTGAAAGTATTGTCTTATCATGTTTGGAGAGTAAAACTGATGCCATTGTTAATCATCTTCTGCGAGATTGTGATTTAATTGAAAGGGTTATCCAAGCAGATAAACATTCTGTTCTCTCTTCCGACAGAAATCTGCCAACTGTACCTGCTACTGGAAAACAGGCACCACGGGCAGGAAACATTGGCCATATTACTCGAATTGTTAACAAACTTGTTCACTTGACACACAGCCGAAGCCACATACTGACATGTCTTCAGGAGAATAGTGAATGGAATGAATGGCAGGCTACTGTGCTTCAGAATCGTAATGTGGTTGAGAATGTTAACCGTTGGGCTTGTGGACGCCCGACTGCTTTACAAGATAGGATGAGGGATAGCGATGACGACGACATTCATGACAGGGACTATGATGTTGCAGCTTTAGCTAATAATTTGAGTCAGGCCTTTAGATATAAACTTTATGGGAATGAGGATAATGAAGAGGAACGTGGAAGCCATGATCGAGATGATGAGGATGTCTACTTTGATGATGACTCTGCCCAAGTAGTCATATCGTCTCTAAGACTCGGTGATGAACAAGGGAGTAGTTTGTTTACAAACTCCAACTGGTTTGCATTCCAAGACGACAGAATTGGTGATGCCAATGGAGGTACAACATCATCTGATATGATGGATGAGATAAACTTGAATGGTGCTGCTAATGGTGGTAACAACAGTGACGATGAGGTAGTGGTTGGAGAGGATGAAGAATTGGATGAAAGCAAAAATACTATGAATGACACATCTAGCTCTAGCACAAACTTCTTTGGTGGATTACCAGGTAGCAATTCCGGGAATGGAGGTGCTTCAAATGATACAGGTTTCTTCAGATTTGAGGCATCAGACAAGGAAGAGTGTTTTGGTGACAGGCCTTTGCCCGATTGGGTGGGATGGGGAGAACCTTCAGATATGCAAGTAACCGGTGCAAGCATGAACCCATTTGTGGATCATGATGAGTCTGGTAGCAGCCCTTCTACTAAGCCTCAAATAGGTAGCCCTAATTCTAACTCTCCAAAAGCGGAATCTATTTCTTCGAATGGTTCACCAAATAGTAAAGATTTGATTGACGGTGTTGGCGACTCAACTCAAAGATCAGCAGCAGTGCCCTCACTATTTGAGGAGGATGTTGAATTTGTAGGTGTAGAATTAGAAGGTACTGAGAAGGCTATGGAACAGGCTCTTAAAGAGGGGATAGTTGGGGAAGCAGGACCGTTGAAAAGAAACATGTCCCCAAAAGCAGCCGAAAAGGAAAACTCCGAAGACGGTAATCCTGGAATGAAGGAATTCAATGACGCCAATTACTGGAGGGTTGATCAAGAGGTTGCTGTTCTGGAGTGA 2526 0.4169 MFWKLASLSASSPVEAILDKDNFTLEELLDEEEVIQECKALNSRLINFLRDPAQVEQLLRYIIEEPPQDAESKRTFKFPFIACEIFTCEIDVILKTLVDEEELMNLLFSFLEPNRSHSALLAGYFSKVVVCLMIRKTVSLMNYVQAHQNVFRQLVDLIGITSIMEVLVRLVGADDHVYPNFIDVMQWLAESNLLEMIVDKLSPSCPPEVNANAAETLCTITRNASSTLAIKLSSPSFVAKILGYALEDSQSKSTLVNSLSVCISLLDPKRSNVPSPLFHSFRSQHMYEPHIPVKPETISAMFPKLSDLLMLLSVSSDEKVLPTTYGELRPPLGKHRLKIVEFIAVLLKTGNEAAEKEMVNSGTIKRVIDLFFEYPYNNSLHHHVESIVLSCLESKTDAIVNHLLRDCDLIERVIQADKHSVLSSDRNLPTVPATGKQAPRAGNIGHITRIVNKLVHLTHSRSHILTCLQENSEWNEWQATVLQNRNVVENVNRWACGRPTALQDRMRDSDDDDIHDRDYDVAALANNLSQAFRYKLYGNEDNEEERGSHDRDDEDVYFDDDSAQVVISSLRLGDEQGSSLFTNSNWFAFQDDRIGDANGGTTSSDMMDEINLNGAANGGNNSDDEVVVGEDEELDESKNTMNDTSSSSTNFFGGLPGSNSGNGGASNDTGFFRFEASDKEECFGDRPLPDWVGWGEPSDMQVTGASMNPFVDHDESGSSPSTKPQIGSPNSNSPKAESISSNGSPNSKDLIDGVGDSTQRSAAVPSLFEEDVEFVGVELEGTEKAMEQALKEGIVGEAGPLKRNMSPKAAEKENSEDGNPGMKEFNDANYWRVDQEVAVLE 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01356 841 MobiDBLite consensus disorder prediction 797 828 - -
Vifa1g01356 841 PANTHER SIT4 YEAST -ASSOCIATING PROTEIN-RELATED 1 813 IPR007587 GO:0019903|GO:0043666
Vifa1g01356 841 Pfam SIT4 phosphatase-associated protein 131 357 IPR007587 GO:0019903|GO:0043666
Vifa1g01356 841 Pfam SIT4 phosphatase-associated protein 357 490 IPR007587 GO:0019903|GO:0043666
Vifa1g01356 841 MobiDBLite consensus disorder prediction 712 764 - -
Vifa1g01356 841 MobiDBLite consensus disorder prediction 688 767 - -
Vifa1g01356 841 MobiDBLite consensus disorder prediction 612 671 - -
Vifa1g01356 841 MobiDBLite consensus disorder prediction 640 667 - -
Vifa1g01356 841 SUPERFAMILY ARM repeat 177 462 IPR016024 -
Vifa1g01356 841 MobiDBLite consensus disorder prediction 806 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01356 Vifa-Chr1 220724614 220732743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01356 K15501 - gmx:100802276 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01356 1 220724614 220732743 Vifa1g01356 1 220724614 220732743 ECH
Vifa1g01356 1 220724614 220732743 Vifa6g00584 6 228137402 228146186 PCT