Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00776 ATGGATTTTTGGACTTCTTCTCTCCCTCTTGATGATGAATTCCAAAAGCTTGTAATTCGAATGAATCCTCCCAAAGTAACTGTGGATAATTCTTCAAGCAGAACAACCACTTTGATAAAGGTTGATAGTGCTAATAAGCGTGGTAGTTTGTTGGAAGTTGTTCAGGTTCTTACTGATATGAATCTCATTGTTAGAAGAGCTTATATTTCATCTGATGGAGAATGGTTTATGGATGTTTTTCATGTTACTGATCAAAATGGGAAAAAGTGTCTTCAAGAAGATGTTGCTGACAGAATTCAACAGTCACTCGGTCCAAGAATCCGCAGTTTCCGATCGGTGAGAAGGTCGGTCGGAGTTCAAGCTGCGGCAGAACATACGACGATCGAGTTAACAGGACGAGATAGGCCGGGATTGCTCTCAGAAGTTTTTGCTATTCTCACTGACCTTAAATGCAACGTGGTAGCGGCTGAAGTCTGGACTCACAATTCAAGAATGGCGTCAGTAGTTTACTTCACCGACGACACAACGGGATTGCCAATAGACAATCACGACCGCCTCGCCAAAATTAAGCATCTCCTGCTATATGTCCTGAGAGGAGACATCGACAAGAAGAACGCAAACACTGCTGTTTCGTTTTGTTCGACTCATAAGGAAAGGAGGCTGCATCAGCTGATGTATGCTGATCGTGATTATGATGTATATGATGGTGATTATTCTTGCTCAACAAGTAACAGAAACAAGCTCAATGTAACTGTTGATGATTGCATTGACAAAGGATATACGGTCGTGAATTTGAGGTGTCCGGATCGACCAAAGTTACTATTCGATACTATTTGCACACTCACTGACATGCAGTATGTTGTGTACCATGGAACTGTCACTGCAGAAGGACTAGAAGCATATCAGGAATACTACATAAGGCACGTGGATGGATATCCTATCAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCACTGCTTGGAGGCTGCTGTTCGGAGACGAACTTCTGAGGGAATAAAACTTGAACTCTGCGGTGAAGACAGAGTTGGCCTTTTGTCCGACGTAACTCGCATATTTAGAGAAAACGGCCTTTCAGTCAGCCGCGCCGAGGTCACAACAAGGGGTTCACAAGCCATAAATGTTTTCTATGTGACAGACGTGTCTGGAAATCCGGTTAAGAGTGAAACAATTGAGGCGGTTCGAAAAGAGATTGGATTGACTATACTGCGTGTAAAAGACGACGACATGTGCACGAATTCTCTATCCCAAGAGCGTGGAAAATTTTCTTTACGCGATATCGTTCGATCGAGATCCGAGAAGTTTCTTTACAATTTAGGTCTGATGAAGTCTTGTTCTTGA 1359 0.4283 MDFWTSSLPLDDEFQKLVIRMNPPKVTVDNSSSRTTTLIKVDSANKRGSLLEVVQVLTDMNLIVRRAYISSDGEWFMDVFHVTDQNGKKCLQEDVADRIQQSLGPRIRSFRSVRRSVGVQAAAEHTTIELTGRDRPGLLSEVFAILTDLKCNVVAAEVWTHNSRMASVVYFTDDTTGLPIDNHDRLAKIKHLLLYVLRGDIDKKNANTAVSFCSTHKERRLHQLMYADRDYDVYDGDYSCSTSNRNKLNVTVDDCIDKGYTVVNLRCPDRPKLLFDTICTLTDMQYVVYHGTVTAEGLEAYQEYYIRHVDGYPISSEAERQRVIHCLEAAVRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVSRAEVTTRGSQAINVFYVTDVSGNPVKSETIEAVRKEIGLTILRVKDDDMCTNSLSQERGKFSLRDIVRSRSEKFLYNLGLMKSCS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00776 452 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Vifa1g00776 452 CDD ACT_ACR_3 260 334 - -
Vifa1g00776 452 SUPERFAMILY ACT-like 34 104 IPR045865 -
Vifa1g00776 452 SUPERFAMILY ACT-like 336 405 IPR045865 -
Vifa1g00776 452 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Vifa1g00776 452 ProSiteProfiles ACT domain profile. 340 416 IPR002912 -
Vifa1g00776 452 Pfam ACT domain 126 175 IPR002912 -
Vifa1g00776 452 Pfam ACT domain 342 402 IPR002912 -
Vifa1g00776 452 CDD ACT_ACR_4 338 409 - -
Vifa1g00776 452 Gene3D - 338 413 - -
Vifa1g00776 452 Gene3D - 121 193 - -
Vifa1g00776 452 SUPERFAMILY ACT-like 124 179 IPR045865 -
Vifa1g00776 452 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 8 412 IPR040217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00776 Vifa-Chr1 129500073 129502187 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00776 - - gmx:100798999 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00776 1 129500073 129502187 Vifa1g00776 1 129500073 129502187 ECH
Vifa1g00776 1 129500073 129502187 Vifa4g03003 4 963098507 963100641 ECH