Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00572 ATGCTGAGAAGGAGGTTGATTTCGTTGGTGTTGTTGAGGAAACTGTTAACTGCAGCTATATGTTTAATAGCTGTTGTGGCTTTGTTCTCTGTTCATTTTCATATTGTTCCTTCATCTAAGGATCATAAGTTCAATGACAAGATCACAACGGTTTACTCGGGGCAAAGCTGGACGCGGGAGTTAGCTCCACCCCATTTATCCAAAGCAGCACTTCAAACTCCCAAGTTGAATGGTTCCAGACGGGATTCAGATTACGAGAAGCTATGGAAGCCTCCATCGAATCGTGGGTTTCTTCCCTGTGCAGAGCCTACTCCTAATTACACTACTCCCGTTGAGTCACGGGGATATCTTTTAGTTCATACAAATGGTGGGCTCAACCAAATGCGTTCTGGGATATGTGATATGGTAGCTGTAGCTCGTATCCTAAATGCTACGCTTGTAATTCCGGAACTCGATAAAAGATCATTTTGGCAAGATACAAGCAATTTCTCTGATATTTTTGATGAAGATCATTTTATTAATTCTCTAGCTAACGATGTCAAAATAATTAAGAAGCTTCCCGATGATCTGGTTAATGAAACGAGAAAGGTCAAGCAATTCATAAGCTGGTCTGGCATGGATTATTATGAGAATGAGATTGCAAAGTTGTGGGAAGATTACCAAGTTATTCGTGCTTCCAAATCTGATTCACGGCTAGCGAACAACAATCTACCTCCAGACATTCAGAAGCTTCGCTGCCGAGCTTGTTATGAGGCTCTTCGTTTCTCTCCTCGCATTGAACAAATAGGAAAATTGTTAGTTGAGAAAATGAGGTCATTGGGTCCTTATATTGCCTTGCATTTACGTTATGAGAAGGATATGCTTGCGTTTAGCGGCTGCACGCATGATTTATCTCTAGATGAAGCTGAAGAGCTACGGATTATCAGGGAGAACACTTCGTATTGGAAAGTAAAGGATATAGACCCCATTGAACAGAGATCCAAAGGGTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTTACAGCTCTTGGATATCCATCAAAGACTCCGATATATATTGCTGCTGGAGAGATATATGGGGGTGAGTCTCATATGGCTGAACTGCGATCCCGTTATCCATTGTTAATGAGCAAGGAAAAGTTGGCATCTTTTGAGGAGCTTGAACCCTTTTTCAATCATGCTTCTCAAATGGCTGCTCTTGACTATATTGTATCTATTGAAAGTGATGTATTTATACCCTCTTATTCTGGTAACATGGCAAGGGCTGTTGAAGGTCATCGCCGATTTCTTGGCCGTGGAAGATCAATATCTCCAGATAGGAAAGCCCTTGTTCGACTCTTCGATAAACTGGACCAAGGAACAATGACCGAGGGAAAAAAACTGTCGTATAGGATTATAGATCTCCACAGAAGACGGCTTGGTTTCCCGAGAAAGAGAAAAGGGCCAATATCGGGAACAAAGGGAATGGACAGGTTTCGCTCGGAAGAAACCTTTTATGCTAATCCTTTACCTGATTGCCTATGCCGGCCAGAATCATCGCCACAAAACACCTCTCACATTGTCAAGTAA 1575 0.4203 MLRRRLISLVLLRKLLTAAICLIAVVALFSVHFHIVPSSKDHKFNDKITTVYSGQSWTRELAPPHLSKAALQTPKLNGSRRDSDYEKLWKPPSNRGFLPCAEPTPNYTTPVESRGYLLVHTNGGLNQMRSGICDMVAVARILNATLVIPELDKRSFWQDTSNFSDIFDEDHFINSLANDVKIIKKLPDDLVNETRKVKQFISWSGMDYYENEIAKLWEDYQVIRASKSDSRLANNNLPPDIQKLRCRACYEALRFSPRIEQIGKLLVEKMRSLGPYIALHLRYEKDMLAFSGCTHDLSLDEAEELRIIRENTSYWKVKDIDPIEQRSKGFCPLTPKEVGIFLTALGYPSKTPIYIAAGEIYGGESHMAELRSRYPLLMSKEKLASFEELEPFFNHASQMAALDYIVSIESDVFIPSYSGNMARAVEGHRRFLGRGRSISPDRKALVRLFDKLDQGTMTEGKKLSYRIIDLHRRRLGFPRKRKGPISGTKGMDRFRSEETFYANPLPDCLCRPESSPQNTSHIVK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00572 524 Pfam GDP-fucose protein O-fucosyltransferase 116 431 IPR019378 -
Vifa1g00572 524 PIRSF UCP009360 1 513 IPR024709 -
Vifa1g00572 524 FunFam O-fucosyltransferase 28 247 441 - -
Vifa1g00572 524 PANTHER OS02G0726500 PROTEIN-RELATED 13 511 - -
Vifa1g00572 524 CDD O-FucT_plant 116 437 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00572 Vifa-Chr1 98333032 98337003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00572 60 515 Miscellaneous Gene Families AT1G22460 69.737 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00572 - - gmx:100795727 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00572 1 98333032 98337003 Vifa1g00572 1 98333032 98337003 ECH
Vifa1g00572 1 98333032 98337003 Vifa2g03446 2 995093430 995098614 PCT