Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00404 ATGAGTGTAGATCCGAAGAAAACTGCCTCTAACGGGAATGAGAAAATATTAATACCACAAGAACAGCAGGCTAAGATCAATGAGATGAGAAAGCTAGTAGGGCCACTGTCTGGTAAGGCATTGGTTTATTGTTCTGACGCATCCATCGCGAGGTATTTAAGGGCACGGAGTTGGAATGTCAAGAAGGCAGCTAAAATGTTGAAGCAGACCCTTAAGTGGAGAGCAGAATATAAACCAGAAGAGATCCGCTGGGAAGATGTTGCTCAAGAAGCAGAGACCGGAAAGATCTACAGATCAAACTATATTGACAAGCATGGGAGAACAGTACTTGTAATGAGACCCGCTCGTCAGAACTCAAAGTCAACAAAAGGACAGATTAAGTATTTGGTGTACTGCATGGAGAATGCTATTCTAAATCTTCAACAGGAGCAGGAACAGATGGTCTGGCTGATTGATTTCCAGGGTTTCAGTATGTCACATATATCTATCAAAGTGACACGCGAAACTGCTCATGTATTACAAGAACATTATCCTGAAAGGCTGGGTCTGGCAATACTCTACAATCCTCCAAAAATCTTCGAGCCATTCTTCACGATGGTAAAGCCCATATTAGAGACCAAGACTTATAACAAAGTCAAGTTTTGTTATTCTGATGACCAGAACACCAAGAAGATTATGGAGGATTTATTTGATCTGGACCATCTTGAATCCGCATTCGGTGGGAATGAAAATACACCATTTGATATTAATAAATATGCCGAGAGAATGAAAGAGGATGATAAGAAGATTCCCTCTTTCTGGATAAGGGAAACCTCTCCATCCTCAGTTCCAATTGATGTTCCTTCTTTAGATTCCATTAAACTAGACACCGATTCTGATGCCTCTGACAACGAGAAAATAGTTCGTTCTTCTGACTCAGTAGCGGACGCCAGCTTAGTCAACCCTGATCAAAACTCGGTTAATGAAGAGGATCTGAATGTGAGTGCTGCTGTGCATTAG 999 0.4144 MSVDPKKTASNGNEKILIPQEQQAKINEMRKLVGPLSGKALVYCSDASIARYLRARSWNVKKAAKMLKQTLKWRAEYKPEEIRWEDVAQEAETGKIYRSNYIDKHGRTVLVMRPARQNSKSTKGQIKYLVYCMENAILNLQQEQEQMVWLIDFQGFSMSHISIKVTRETAHVLQEHYPERLGLAILYNPPKIFEPFFTMVKPILETKTYNKVKFCYSDDQNTKKIMEDLFDLDHLESAFGGNENTPFDINKYAERMKEDDKKIPSFWIRETSPSSVPIDVPSLDSIKLDTDSDASDNEKIVRSSDSVADASLVNPDQNSVNEEDLNVSAAVH 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00404 332 SUPERFAMILY CRAL/TRIO domain 84 265 IPR036865 -
Vifa1g00404 332 FunFam Phosphatidylinositol transfer protein 3 5 276 - -
Vifa1g00404 332 MobiDBLite consensus disorder prediction 289 332 - -
Vifa1g00404 332 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
Vifa1g00404 332 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Vifa1g00404 332 MobiDBLite consensus disorder prediction 307 325 - -
Vifa1g00404 332 MobiDBLite consensus disorder prediction 289 303 - -
Vifa1g00404 332 PANTHER GH16843P 6 272 - -
Vifa1g00404 332 CDD SEC14 92 242 IPR001251 -
Vifa1g00404 332 SMART sec14_4 90 244 IPR001251 -
Vifa1g00404 332 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Vifa1g00404 332 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Vifa1g00404 332 Gene3D - 3 271 IPR036865 -
Vifa1g00404 332 Pfam CRAL/TRIO domain 93 241 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00404 Vifa-Chr1 64415842 64419441 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00404 K26544 - gmx:100777106 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00404 1 64415842 64419441 Vifa1g00404 1 64415842 64419441 ECH
Vifa1g00404 1 64415842 64419441 Vifa2g01847 2 479376586 479377869 PCT