Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01259 ATGGCACAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCCAGGAAAGGCCGAACTGGTGCAAGAATAATAAATCCAAATGACCCTGAAGAAAATTCTGATTTAGGTCTTGACAATCCATCATCTGAGCAACTACCTCCATCCAAACCCAGAGTTAGTTCAGAGGATCCATCTGGAAAGGGATCACTTCCTTTGGAAGATGATCCTAAGCATTTCATCGACTCTCCAGCTCGTCATGACAATGTAAGCAATAGGACTAGCAGCAGAAGCCATGGAGTAACTTCTGCTGATAACCGTAGAAGACATTCTACTCAAAGTGTTGGGTCTGACCACAGCATTGACCGTTCTCCACTTCATCGCCAGGCCAGACCCCCTGGCAGAGACAGTCCCCAATGGGAACCAAAGAATTCATATGACAACATCCAGGGAACACCAGGGAGATCTCGGTTAAGACAGGCTAACCGGGGAGATGAAACACCAGATAAAGGTGCAGCTGTTCCTAAGTTTGGTGACTGGGATGTGAACAACCCAGCCACAGCAGATGGTTTTACACACATTTTCAACAAAGTGAGGGAGGAGAGACAGGGAGGGCCGGCACAAGTTCCGGGCACGCCTAACGATAGACCACAACATAGCAAGGGCCAATTCACTGATGACAAAGTCCAGTGTTGCTGCTTTGCCTGGGGCAAAAAATGA 738 0.4715 MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGARIINPNDPEENSDLGLDNPSSEQLPPSKPRVSSEDPSGKGSLPLEDDPKHFIDSPARHDNVSNRTSSRSHGVTSADNRRRHSTQSVGSDHSIDRSPLHRQARPPGRDSPQWEPKNSYDNIQGTPGRSRLRQANRGDETPDKGAAVPKFGDWDVNNPATADGFTHIFNKVREERQGGPAQVPGTPNDRPQHSKGQFTDDKVQCCCFAWGKK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01259 245 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 32 IPR008700 -
Vian9g01259 245 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 174 209 IPR008700 -
Vian9g01259 245 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 6 228 IPR040387 -
Vian9g01259 245 MobiDBLite consensus disorder prediction 108 136 - -
Vian9g01259 245 MobiDBLite consensus disorder prediction 93 107 - -
Vian9g01259 245 MobiDBLite consensus disorder prediction 206 230 - -
Vian9g01259 245 MobiDBLite consensus disorder prediction 75 92 - -
Vian9g01259 245 MobiDBLite consensus disorder prediction 28 191 - -
Vian9g01259 245 MobiDBLite consensus disorder prediction 46 65 - -
Vian9g01259 245 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01259 Vian-Chr9 26641750 26646965 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01259 K13456 - gmx:100499218 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01120 2 21899995 21905628 Vian9g01259 9 26641750 26646965 PCT