Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01120 ATGGCTCAAAATTCTCATGATCCAAAGTTTGGCAATCAGGAAAATGAAAAAAATGTCTCAGATACAGCTTATTCTGACAAAACCCAGAAAGGTCAATCTGGTTCGAAGATGATAAATGAGCCCGAAAAAAATTCATATCCAGTTTCGTCTGCTGACCTACCCCATTCAAAACCAAGAGTTCACTCAGAGGATCCAATTGGAAAGGGATCAGTGAGATCCACATATGAGTTACAAAAGAGCAGGGACAATGGTGATGCTAAACATTTCACTGAGTCTCCAGCTCGCCATGACAATGGTAGCCATGTGAGGGGCACTGATTCTGTGCATCGAGGCCAGGGAGTAGGTTCTGCTGACAACAGTAGAAAACCTTCAAGACAAACTATTGGATCTGAACACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAACCCCTGGCAGGGATAGTCCTTCTTGGGAAGTAAAGAATTCATATGACACCAGCCAAGTTACCCCAGGAAGGTCCCGGTTAAGACCATCTAACCGAGGGGATGAAACTCCTGATAAAGGTGCCGCGGTTCCAAAATTTGGTGAGTGGGACGAGAGCAACCCTGCATCAGCTGATGGCTACACTCATATTTTCAACAGAGTGCGGGAGGAGAAGCAGGTGGGGGCTGGACATGTGCCAGGCACACCTAATGCTAGACAATATGGTGTGCGGAATCAGCCTGCTGATGAGAAAGCTCAGAGTTGCTGCTTTTGCTGGGGGAAAAAATGA 759 0.4664 MAQNSHDPKFGNQENEKNVSDTAYSDKTQKGQSGSKMINEPEKNSYPVSSADLPHSKPRVHSEDPIGKGSVRSTYELQKSRDNGDAKHFTESPARHDNGSHVRGTDSVHRGQGVGSADNSRKPSRQTIGSEHNIDRSPLHRQAKTPGRDSPSWEVKNSYDTSQVTPGRSRLRPSNRGDETPDKGAAVPKFGEWDESNPASADGYTHIFNRVREEKQVGAGHVPGTPNARQYGVRNQPADEKAQSCCFCWGKK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01120 252 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 181 216 IPR008700 -
Vian2g01120 252 MobiDBLite consensus disorder prediction 216 236 - -
Vian2g01120 252 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 8 247 IPR040387 -
Vian2g01120 252 MobiDBLite consensus disorder prediction 172 189 - -
Vian2g01120 252 MobiDBLite consensus disorder prediction 151 170 - -
Vian2g01120 252 MobiDBLite consensus disorder prediction 112 133 - -
Vian2g01120 252 MobiDBLite consensus disorder prediction 78 104 - -
Vian2g01120 252 MobiDBLite consensus disorder prediction 1 201 - -
Vian2g01120 252 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01120 Vian-Chr2 21899995 21905628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01120 K13456 - gmx:100499220 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01120 2 21899995 21905628 Vian9g01259 9 26641750 26646965 PCT