Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00844 ATGATGGTGCAGGGCATTACATGCAACGAAGTGACAACATACATGTCACCGTGCCTATCTTACCTAACCAATGGTGGAGAGGTTTCAGATGCGTGCTGCGGAGGAGTTAGGACCATTCTGGGAGCTGCTGGAACAACCTCTGAAAAACAAACTGTCTGCAACTGTCTTAAGGAAGATGCTAATAACTTCGGCATCAACGATGATTACGCTCAGGCACTCCCCACTCGCTGCGGTGTCAGCGTTCCTTACAAGATCAGCCGCTCCACCAACTGTGAAAAGTATCATCAGGTTCTGAAAGGATTGCTCCGTAGAGTCTGCACCTTCGTTGTCGGAAGCACCATTTCCATTGTTGGAATGCTGCAACGACTTACATCTCTGTATCGGTGGAAATTGGAATTCCCTGCATCTCCATTGCTGAAGCTTGAACGGTCTGCACCTCCATAG 444 0.4865 MMVQGITCNEVTTYMSPCLSYLTNGGEVSDACCGGVRTILGAAGTTSEKQTVCNCLKEDANNFGINDDYAQALPTRCGVSVPYKISRSTNCEKYHQVLKGLLRRVCTFVVGSTISIVGMLQRLTSLYRWKLEFPASPLLKLERSAPP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00844 147 CDD nsLTP1 6 91 - -
Vian2g00844 147 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 93 IPR000528 GO:0006869|GO:0008289
Vian2g00844 147 Gene3D - 5 95 IPR036312 -
Vian2g00844 147 PRINTS Plant phospholipid transfer protein signature 27 41 IPR000528 GO:0006869|GO:0008289
Vian2g00844 147 PRINTS Plant phospholipid transfer protein signature 64 81 IPR000528 GO:0006869|GO:0008289
Vian2g00844 147 PRINTS Plant phospholipid transfer protein signature 7 23 IPR000528 GO:0006869|GO:0008289
Vian2g00844 147 PRINTS Plant phospholipid transfer protein signature 48 63 IPR000528 GO:0006869|GO:0008289
Vian2g00844 147 PRINTS Plant phospholipid transfer protein signature 82 93 IPR000528 GO:0006869|GO:0008289
Vian2g00844 147 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 6 93 IPR036312 -
Vian2g00844 147 Pfam Protease inhibitor/seed storage/LTP family 8 91 IPR016140 -
Vian2g00844 147 SMART aai_6 8 91 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00844 Vian-Chr2 12790767 12792397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00844 5 92 Acyl Lipid Metabolism Gene Families AT5G59310 48.864 1.92e-24 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00844 - - pvu:PHAVU_008G087100g 154.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00844 2 12790767 12792397 Vian9g00920 9 17065326 17065764 PCT