Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00791 ATGGGTTTGTTTTCTGGAATTTTCATGGGGTTGGTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAGGTACCGAAGCGCCAAAAGAATTGCAAAGGCAGCTGACATTAAACTCCTTTCATCCCTTAGCAGAGATGATTTGAAGAAAATTTGTGGTGAAAGTTTGCCTGAATGGATATCATTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTGGCAGAAGCTGCAACTTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCACCTGGAATTACTTCATTGAAGTTCAGCAAACTCTCACTTGGAAATGTGGCCCCAAAAATAGAAGGGATTCGTGTTCAGAGTCTTACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAGGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTACAGGTTTTCACCATTATCCGTGTTATATTCCAACTTTCTGAAGAGATCCCTTGCATTTCTGCTGTTGTTGTAGCTCTACTTGCTGAGCCAAAGCCAAGGATTGACTATACTCTGAAAGCAGTTGGTGGAAGTTTAACAGCTATTCCTGGAATATCAGATATGATTGATGATACTGTGAATTCAATTGTTACTGACATGCTTCAATGGCCCCATAGGATTGTGGTTCCACTTGGTGGTATTCCTTGTGATCTAAGTGAGCTGGAGCTTAAACCCCAAGGAAAACTTTCAGTGACTGTAGTGAAAGCGACTGCTTTGAAGAATATGGAAATGATTGGAAAGTCAGATCCGTATGTAGTTGTGCATATTCGACCATTGTTCAAGTATAAAACCAAAGTTGTTGATAACAACTTGAATCCTACTTGGAATGAGAGATTTGAGTTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTAGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTTCAGGTACGCCTTAATGATCTAGACTCACAAACTGAAAAGGAGATGGAATTGAGGCTGCTGTCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAATAAAGGTCTTATACTATCAGTTTAACAAGGAAGAACAACTGGCTGCACTAGAAGAAGAGAAAAAGATACTAGAAGAAAGGAAGAAAATGAAAGAAGCAGGAATGATAGGAAGCACAATGGATGCACTAGGATCTGGTGTTGGACTGGTTGGTACTGGTGTTGGACTGGTTGGTACTGGTGTTGTGGCCGGTGCCGGTCTTATGGGAAGTGGCGTTGTGGCTGGTGCCGGGCTAGTTGGCAGTGGCATCGGTGCTGGAGCAGGGCTAGTTGGCAGTGGTTTTGGAGCCGTTAGCAGTGGATTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGCCATAGTGGCTCTAAAAAGAGTGGCTCTTCAACTCCAGTCAATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1575 0.4311 MGLFSGIFMGLVFGIALMAGWARMMRYRSAKRIAKAADIKLLSSLSRDDLKKICGESLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIIRVIFQLSEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPCDLSELELKPQGKLSVTVVKATALKNMEMIGKSDPYVVVHIRPLFKYKTKVVDNNLNPTWNERFELIAEDKETQSLILEVFDKDIGQDKRLGIVQVRLNDLDSQTEKEMELRLLSSLDTLKVKDKKDRGTLTIKVLYYQFNKEEQLAALEEEKKILEERKKMKEAGMIGSTMDALGSGVGLVGTGVGLVGTGVVAGAGLMGSGVVAGAGLVGSGIGAGAGLVGSGFGAVSSGLSKAGKFMGRTITGHSGSKKSGSSTPVNNAQENGGGAKPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00791 524 CDD C2 266 365 - -
Vian9g00791 524 Pfam C2 domain 264 362 IPR000008 -
Vian9g00791 524 CDD SMP_SYT 59 248 - -
Vian9g00791 524 FunFam synaptotagmin-4 isoform X1 259 417 - -
Vian9g00791 524 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Vian9g00791 524 MobiDBLite consensus disorder prediction 498 516 - -
Vian9g00791 524 SMART C2_3c 265 362 IPR000008 -
Vian9g00791 524 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 421 IPR045050 GO:0008289
Vian9g00791 524 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Vian9g00791 524 PRINTS C2 domain signature 281 293 IPR000008 -
Vian9g00791 524 PRINTS C2 domain signature 306 319 IPR000008 -
Vian9g00791 524 PRINTS C2 domain signature 328 336 IPR000008 -
Vian9g00791 524 Coils Coil 391 418 - -
Vian9g00791 524 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Vian9g00791 524 MobiDBLite consensus disorder prediction 496 524 - -
Vian9g00791 524 Gene3D C2 domain 259 419 IPR035892 -
Vian9g00791 524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00791 Vian-Chr9 11046138 11057819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00791 260 363 Lipid Metabolism Gene Families AT3G61300 30.769 1.59e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00791 - - gmx:100777838 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00791 9 11046138 11057819 Vian9g00791 9 11046138 11057819 ECH
Vian2g00718 2 9879746 9882886 Vian9g00791 9 11046138 11057819 PCT