Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00718 ATGATAACTGGGATGCCAATATCATTTACAGTTATGAAATTACTGACTTTTTCGATAACATTTTATCAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACAGCACTTCCTGGAATTTCAGACATGATTGATGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGTATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAACGCTTAAAGTGAAGGTAGTGAAGGCTAATGATCTGAAGAATATGGAAATGATTGGGAAGTCCGATCCTTATGTAGTGTTGCATATTCGGCCGCTGTTTAAGGTTAAAACAAAGGTCATTGATAACAACTTGAATCCTGTTTGGAACGAGGAATTTGAGTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTTGAGGTTTTTGATGAAGACATTGGGCAAGATAAGCGATTGGGAATAGCAAAATTACCACTTATTGACCTGAAAGAAGAAACTGAAAAGGAGTTTGAGTTGAGACTGCTGCCATCACTTGATACACTGAAAGTGAAAGACAAAAAGGATCGAGGAACCTTGACATTAAAGATCTTTTATCACGAATTTGACAAGAAAGAACAATTGGTTGCACTAGAGGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTTAAAGAGGAGGGAGTTATAGGAAGTACAATGGATGCCCTAGATGGAGCAGCATCGGTGGTTGGTTCCGGTGTTGGAATGGTGGGTTCCGGTGTCGGAATGGTGGGTTCTGGTGTTGTTTCTGGTGCTGGACTTGTTCGGAGTGGTGTTGTTTCTGGAGCTGGATTTGTGGGGAGTGGTGTTACTTCTGGTGCTGGACTTGTGGGGAGTGGTGTTACTTCTGGTGCTGGACTTGTGGGGAGTGGTGTTGCTTCTGGTGCTGGACTTGTGAGTAGTGGAGTTTCTTCTGGAGCTGGGCTTGTTGGCGGCGGCCTTGGTGCTGGATTCGGGGCTGTTGGCAGTGGACTCGGTGCTGTTGGCAGTGGACTCAGCAAAGCAGGGAAGTTCATGGGAAGGACGATCACCGGACAAGGGGGATCCAAAAGGAGTGGTTCATCTACTCCTATCAATGTGGAGGAGGCTGGTGGTGGTGCAAAACCTCTCAATCAGTAA 1200 0.45 MITGMPISFTVMKLLTFSITFYQPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGTLKVKVVKANDLKNMEMIGKSDPYVVLHIRPLFKVKTKVIDNNLNPVWNEEFELIAEDKETQSLIVEVFDEDIGQDKRLGIAKLPLIDLKEETEKEFELRLLPSLDTLKVKDKKDRGTLTLKIFYHEFDKKEQLVALEAEKKILEERKKLKEEGVIGSTMDALDGAASVVGSGVGMVGSGVGMVGSGVVSGAGLVRSGVVSGAGFVGSGVTSGAGLVGSGVTSGAGLVGSGVASGAGLVSSGVSSGAGLVGGGLGAGFGAVGSGLGAVGSGLSKAGKFMGRTITGQGGSKRSGSSTPINVEEAGGGAKPLNQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00718 399 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 87 214 IPR035892 -
Vian2g00718 399 Gene3D C2 domain 82 241 IPR035892 -
Vian2g00718 399 CDD C2 89 186 - -
Vian2g00718 399 MobiDBLite consensus disorder prediction 372 386 - -
Vian2g00718 399 Coils Coil 214 241 - -
Vian2g00718 399 FunFam synaptotagmin-4 isoform X1 82 240 - -
Vian2g00718 399 ProSiteProfiles C2 domain profile. 70 186 IPR000008 -
Vian2g00718 399 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 21 252 IPR045050 GO:0008289
Vian2g00718 399 MobiDBLite consensus disorder prediction 370 399 - -
Vian2g00718 399 Pfam C2 domain 87 183 IPR000008 -
Vian2g00718 399 PRINTS C2 domain signature 151 159 IPR000008 -
Vian2g00718 399 PRINTS C2 domain signature 104 116 IPR000008 -
Vian2g00718 399 PRINTS C2 domain signature 129 142 IPR000008 -
Vian2g00718 399 SMART C2_3c 88 185 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00718 Vian-Chr2 9879746 9882886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00718 83 173 Lipid Metabolism Gene Families AT3G61300 34.066 2.78e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00718 - - vun:114183274 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00718 2 9879746 9882886 Vian9g00791 9 11046138 11057819 PCT