Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00706 ATGGCAGAAACAACAAAAGGGTATGCGGTTGTGACGGGAGCAAATAAGGGAATTGGATTTGCAATATGCAAGCAATTGGCTTCAAATGGGTTCACTGTGGTACTCACAGCCAGAGATGAGAAGAGGGGTGTTGAAGCTGTTGAGAAACTCAAAGAACTTGGTCTCCCTGGCCATGTGGTTTTTCATCAACTTGATGTTACTGATCCCAAAAGTATAACATCGCTGGCAGATTTCATCAAAAACCAGTGTGGGAAACTGGACATCTTGGTAAACAATGCTGGAATTCCTGGAGCACATGTGGACGGTGAGGCTTTGTCTGCTGCTGGCATTATGGAAAATGCTGATCGTGTTGATTGGAGTAAAATAGTGACTGAAACCTATGAATTAACTGAAGCAGGTCTTAAAACAAACTACTATGGAGTCAAGGAATTAACCAAAACACTTATTCCTTTTCTTCAGTTTTCAAGCTCTCCAAGAATTGTGAATGTTTCCTCATCCGTGGGAAAACTTGAGAATATGAAGGATGGAAGGCCTAAAGAAGTACTTAGTGATGCTGAAAACCTTACAGAAGAAAAGATTGATGAGATTTTGGATGAATTTTTGAAGGCCTTTAAAGAGGGTTCACTAGAAAGCAAAGGTTGGCCTCAGGCAATGTCTGCATATATTGTCTCAAAAGCTGCTCTTAATGCCTACACAAGGATTCTGGCTAAGAAGTATCCCTCATTCTGCATCAATGCTGTTTGTCCAGGCTTTGTGAAAACAGATATAAACTACAATACAGGTTTTTTCACACCTGATGAAGGTGCTGAAACTGCAGTGAGATTGGCACTGCTACCAGATGGTAGCCCTTCTGGCCTTTTTTTCATTAGAAGTGAAGAGAAACCATTTTGA 891 0.4097 MAETTKGYAVVTGANKGIGFAICKQLASNGFTVVLTARDEKRGVEAVEKLKELGLPGHVVFHQLDVTDPKSITSLADFIKNQCGKLDILVNNAGIPGAHVDGEALSAAGIMENADRVDWSKIVTETYELTEAGLKTNYYGVKELTKTLIPFLQFSSSPRIVNVSSSVGKLENMKDGRPKEVLSDAENLTEEKIDEILDEFLKAFKEGSLESKGWPQAMSAYIVSKAALNAYTRILAKKYPSFCINAVCPGFVKTDINYNTGFFTPDEGAETAVRLALLPDGSPSGLFFIRSEEKPF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00706 296 CDD carb_red_PTCR-like_SDR_c 8 296 IPR045313 GO:0016616
Vian9g00706 296 Pfam Enoyl-(Acyl carrier protein) reductase 211 261 - -
Vian9g00706 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vian9g00706 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Vian9g00706 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Vian9g00706 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 8 294 - -
Vian9g00706 296 Gene3D - 2 296 - -
Vian9g00706 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Vian9g00706 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Vian9g00706 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Vian9g00706 296 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vian9g00706 296 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vian9g00706 296 Pfam short chain dehydrogenase 9 171 IPR002347 -
Vian9g00706 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 282 IPR036291 -
Vian9g00706 296 FunFam (+)-neomenthol dehydrogenase 2 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00706 Vian-Chr9 9045002 9046763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00706 10 261 Acyl Lipid Metabolism Gene Families AT1G24360 21.176 2.00e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00706 K15095 - gmx:100803877 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00706 9 9045002 9046763 Vian9g00706 9 9045002 9046763 ECH
Vian2g00665 2 8735841 8738228 Vian9g00706 9 9045002 9046763 PCT