Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00665 ATGGCAGCAGCAACAAGGTACGCAGTTGTCACAGGAGCAAACAAAGGGATAGGATTTGGGATTTGCAAGCAATTGGTTTCTAATGGTGTCACTGTGGTGCTAACAGCTAGGGATGAAAAAAGGGGTACTGAAGCTGTTGAAAAACTGAAGGAGTTTGGTGTATCTGACCAAGTGGTGTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCCCTTGCAAATTTCATCAAAACACATTTTGGGAAACTTGATATCCTGGTGAATAATGCAGGAATAAGTGGAACTAATGTTGACCATGATGCTTTAGCTGCTACACGGGAAAAAGTTGACAGTGTTAATTGGAGAAAATTTGCATATGAAACTTATGAATCTACAGAAGCAAGCATTAGAACAAATTACTATGGAGCCAAATTAATGTGTGAAGCATTTATTCCCCTCATAGAATTGTCAGACTCACCAAGGATTGTTAATGTCTCCTCCACCATGGGGAAGTTGGAGAGAATACGAAATGAATGGGCTAGAGGAATCCTAAGTGATGTTGAAAGCTTAACAGAAGAAAAAGTGGATGAAGTTCTGAAAAGGTTTCTAAATGATTTTAAAGAGGGTTCATTAGAAACCAATGGGTGGCCACCTGAGCTTTCTGCATATATAGTCTCAAAAGCTGCTTTGACTGCCTACACAAGGGTTCTTGCCAAGAAGTACCCATCTTTCTGCATCAATGCTGTTTGCCCTGGCTTTGTGAAAACAGATCTCAACTTCAATATTGGCTATCTTGGAGTTGATGAAGGTGCTGAAAGTGTAGTAAGGTTGGCTCTACTACCTAATGGAGGTCCTTCTGGTCTCTTCTTTTCTCGAAGTGAAGTTGCATCAGTTTATGGAAGACTTTAA 894 0.4027 MAAATRYAVVTGANKGIGFGICKQLVSNGVTVVLTARDEKRGTEAVEKLKEFGVSDQVVFHQLDVTDPKSIESLANFIKTHFGKLDILVNNAGISGTNVDHDALAATREKVDSVNWRKFAYETYESTEASIRTNYYGAKLMCEAFIPLIELSDSPRIVNVSSTMGKLERIRNEWARGILSDVESLTEEKVDEVLKRFLNDFKEGSLETNGWPPELSAYIVSKAALTAYTRVLAKKYPSFCINAVCPGFVKTDLNFNIGYLGVDEGAESVVRLALLPNGGPSGLFFSRSEVASVYGRL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00665 297 Gene3D - 2 293 - -
Vian2g00665 297 PRINTS Glucose/ribitol dehydrogenase family signature 83 94 IPR002347 -
Vian2g00665 297 PRINTS Glucose/ribitol dehydrogenase family signature 280 297 IPR002347 -
Vian2g00665 297 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Vian2g00665 297 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Vian2g00665 297 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Vian2g00665 297 PRINTS Glucose/ribitol dehydrogenase family signature 7 24 IPR002347 -
Vian2g00665 297 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 6 290 - -
Vian2g00665 297 Pfam short chain dehydrogenase 7 168 IPR002347 -
Vian2g00665 297 CDD carb_red_PTCR-like_SDR_c 6 290 IPR045313 GO:0016616
Vian2g00665 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Vian2g00665 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 IPR002347 -
Vian2g00665 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Vian2g00665 297 FunFam (+)-neomenthol dehydrogenase 1 293 - -
Vian2g00665 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 278 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00665 Vian-Chr2 8735841 8738228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00665 6 267 Miscellaneous Gene Families AT4G05530 25.094 1.39e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00665 K15095 - gmx:106797124 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00665 2 8735841 8738228 Vian2g00665 2 8735841 8738228 ECH
Vian2g00665 2 8735841 8738228 Vian9g00706 9 9045002 9046763 PCT