Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00679 ATGGAGAACGAGAAAGCTTTTGAGTTTCTTGGACGCGTTCCTCTTCTGCAGAGGCTTCCGAGCTCGTCTGTGAGGAAGATATCTCAACTTGTGGATGTCAAAAGCTGCGAGCCGGGAGAGTATGTTGTTCGAGAGGGTGAACATGGAGATGGCGTGTACTTCATATTGGATGGAGAGGCTGAAGTTGTTAGATCCGTTAGTGCCAATGATGAAAATCGCCCAGAGTTCCAGTTGAAAAGATATGATTACTTTGGTTATGGTTTGTCAAATACAGTTCACCAGGCAGGTGTTGTTGCTTTGTCTAAGCTGACATGCTTAGTGCTTCCCCACGAGCACTCAACACTGCTGCAGCCAAAATCTATCTGCAGAGCTGAAAATTGCTCTGAGACATGCTCACCTGTGGAGAATATACTGCATGTGGAACCCTTGGAGGTAGATATCTTCCGAGGAATTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGGCACTGGCTGCAGCATCAAAATCTGTTGACTGTCTAAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGAGATTTAGAAATGCCAATTACATATAAAGTTGATCGTATCCGCGATGGGAGGAGCTTTGCTTCAAGGAAAGTAGAAGGAATTCAAAAGGGAATTACCATATTCACGCTGTTGGCTTCATTTCAAAAGGAAGAATCGGGGATGGTCCACCAGAAAGTAGCTATACCATCTGTGCCATCTCCAGATAAGGCAAGATACAAGCTTCTACCAATGGAAGAGCTACGGGAGAGACGTCTTACTGACCCTCGTTTACCAGTTTTGAGATACTGGTTTAGAGCAAAGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGCGTGGTGGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGCTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGACCACTCTATGTGGTTTCATCGATCTGTAAAAGCAGATGATTGGGTGCTATTTGCGATTTTTACTCCTACTGCCCACAGTGCACGCGTCTTTGTGACGGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGACTAGCCAGGAAAATTAATCAAGGAAATTCAGCCATTAAATCTAAGTTGTGA 1197 0.4444 MENEKAFEFLGRVPLLQRLPSSSVRKISQLVDVKSCEPGEYVVREGEHGDGVYFILDGEAEVVRSVSANDENRPEFQLKRYDYFGYGLSNTVHQAGVVALSKLTCLVLPHEHSTLLQPKSICRAENCSETCSPVENILHVEPLEVDIFRGITLPDAPRFGKVFGGQMIGQALAAASKSVDCLKVVHSLHAYFILAGDLEMPITYKVDRIRDGRSFASRKVEGIQKGITIFTLLASFQKEESGMVHQKVAIPSVPSPDKARYKLLPMEELRERRLTDPRLPVLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHREKGFRTRSVSLDHSMWFHRSVKADDWVLFAIFTPTAHSARVFVTGQMFNQKGELLVSLVQEGLARKINQGNSAIKSKL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00679 398 Pfam Thioesterase-like superfamily 161 383 - -
Vian9g00679 398 SUPERFAMILY cAMP-binding domain-like 6 112 IPR018490 -
Vian9g00679 398 CDD CAP_ED 15 112 IPR000595 -
Vian9g00679 398 PANTHER ACYL-COA THIOESTERASE 119 277 IPR003703 GO:0006637|GO:0047617
Vian9g00679 398 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Vian9g00679 398 CDD Thioesterase_II_repeat1 282 383 - -
Vian9g00679 398 CDD Thioesterase_II_repeat2 146 238 - -
Vian9g00679 398 SMART cnmp_10 15 132 IPR000595 -
Vian9g00679 398 FunFam Acyl-CoA thioesterase II 1 124 - -
Vian9g00679 398 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 131 242 IPR029069 -
Vian9g00679 398 Pfam Cyclic nucleotide-binding domain 34 111 IPR000595 -
Vian9g00679 398 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 249 386 IPR029069 -
Vian9g00679 398 Gene3D - 127 387 IPR042171 -
Vian9g00679 398 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Vian9g00679 398 Gene3D Jelly Rolls 1 126 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00679 Vian-Chr9 8587978 8596487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00679 1 398 Acyl Lipid Metabolism Gene Families AT1G01710 56.813 1.94e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00679 K01068 - gmx:100797680 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00679 9 8587978 8596487 Vian9g00679 9 8587978 8596487 ECH
Vian2g00637 2 8238270 8250816 Vian9g00679 9 8587978 8596487 PCT