Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00662 ATGTCAGAAACTGACTTGGCAGTTATTAAACCCGAGATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTTATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAACTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGGTCAAACAAGGAACGTAAATCTTATGATGAGAAATTTGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCGTTAGTCGATCTAACCAGCCGTGCACTTGCTCGAATAATTGAAGGGAAGACGCCAGAGGAGATACGTGATATATTTCATTTGCCAGATGATCTTACAGAGGAAGAAAAGCTGGAGCCATTGAGAAATATAACTGCTGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCAAAAAAGAGAAAAGAACTAAAAGAGCGTGAAAGGTTAAAGAATGTTGAGGTTGAAGAAGAACATGTGGATGATCGTTCAGTTGATGACTTGTTGTCTTTTATCAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCAAAGAATAAAAAGAAGAATAGGAGGAAAAAAGAGCAACAGAAGAATTCTTCTTTGAAGGAGGCATCTGAACTGAACAAGAAGGAGGTAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGATAATTAGTGAGACCTCGTATTTACACTATGCAGAAGATGATGCTTTTACTTCTAAGCCTGAGTTTGATGATGGTGATATAGATGATGAGATTGATCCCGCTTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCATCAGGGCAAGAACGGAAGACGGTGCTTTTCACTGCAGATGGTTTTATAAGGCGACATGCTTGA 1044 0.3937 MSETDLAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDDRSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQKNSSLKEASELNKKEVNGHDIRHQSSEAEIISETSYLHYAEDDAFTSKPEFDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTVLFTADGFIRRHA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00662 347 MobiDBLite consensus disorder prediction 205 255 - -
Vian9g00662 347 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Vian9g00662 347 Coils Coil 170 190 - -
Vian9g00662 347 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Vian9g00662 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Vian9g00662 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Vian9g00662 347 PANTHER SKP1 14 155 IPR016897 GO:0006511
Vian9g00662 347 Coils Coil 223 249 - -
Vian9g00662 347 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Vian9g00662 347 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Vian9g00662 347 MobiDBLite consensus disorder prediction 235 255 - -
Vian9g00662 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00662 Vian-Chr9 8292111 8304967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00662 - - gmx:100794666 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00662 9 8292111 8304967 Vian9g00662 9 8292111 8304967 ECH
Vian9g00662 9 8292111 8304967 Vian2g00611 2 7441016 7445479 ECH
Vian2g00611 2 7441016 7445479 Vian9g00662 9 8292111 8304967 PCT