Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00611 ATGTCAGAAATTGACATGGCGGTTATTAAACCAGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAGCAAGTGGAACAAGAAATTGCAATGTATTGCCCTTTGATTTGTAAAGAAATAATACAAAAAGGGATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCAACATTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAAAGGAAGTCTTATGATGAAAAGTTTGTTAGGATGGACACTAAGCGGCTGTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCCCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAAATATTTCATCTGCCTGATGATCTAACTGAGGTGTCTGGTGCTTGTGAGAACTCTGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAGAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTGAAGAGTGTTGAAGTTGAAGAAGAGCATATAGATAAACGTTCCGTTGATGATCTCTTGTCTTTTATTAATGGAAATGAAGATCAAAAGGGCATTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGGAAAAAAGAGCAACATCAGAAGAACTCTTCTCTGAAGGAAGCTTCTGGAGTGAATAAGAAGGAAGTAAATGGTCAAAACATCAGACCTCCAAATTCTGAAGCTGATATAATTGCTGAGACTTCAATTTCACATACAGAAGATGTTTTTGCTCATAAGGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCACTTAAGGAAAAAATTGACAGGGAAGTCGAAGATTTTGCCCGACGATTAAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCGTCTGGACAAGAAAGGAAGACGATGCTTTTTAGTCCCAATGGAAATAGTTTTCTACGGCGAAATGCTTCCTATTCAAAATGA 1077 0.389 MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICKEIIQKGMGSSKNCAICLPQRVSPATLSLILDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEVSGACENSEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKSVEVEEEHIDKRSVDDLLSFINGNEDQKGIKTSKNKKKNRRKKEQHQKNSSLKEASGVNKKEVNGQNIRPPNSEADIIAETSISHTEDVFAHKEFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTMLFSPNGNSFLRRNASYSK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00611 358 PANTHER SKP1 14 160 IPR016897 GO:0006511
Vian2g00611 358 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Vian2g00611 358 SMART skp1_3 15 116 IPR001232 GO:0006511
Vian2g00611 358 MobiDBLite consensus disorder prediction 334 358 - -
Vian2g00611 358 Gene3D Potassium Channel Kv1.1; Chain A 12 163 IPR011333 -
Vian2g00611 358 MobiDBLite consensus disorder prediction 221 268 - -
Vian2g00611 358 Pfam Skp1 family, dimerisation domain 117 151 IPR016072 GO:0006511
Vian2g00611 358 SUPERFAMILY POZ domain 16 80 IPR011333 -
Vian2g00611 358 FunFam SKP1-like protein 21 isoform X1 12 170 - -
Vian2g00611 358 SUPERFAMILY Skp1 dimerisation domain-like 87 150 IPR036296 GO:0006511
Vian2g00611 358 MobiDBLite consensus disorder prediction 247 267 - -
Vian2g00611 358 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00611 Vian-Chr2 7441016 7445479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00611 - - gmx:100809439 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00611 2 7441016 7445479 Vian2g00611 2 7441016 7445479 ECH
Vian9g00662 9 8292111 8304967 Vian2g00611 2 7441016 7445479 ECH
Vian2g00611 2 7441016 7445479 Vian9g00662 9 8292111 8304967 PCT