Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00531 ATGTCCCACGCCATTAACTACACTCAGCATAAAGAATTGAGTGTGGAAATGAATGACTTTATTTTAAGCTTACCCTGCTCCTCCCCCCTCTGCCGCCGCCTCGACTCGCCAGGATGCAGCCGGAAAAGCAGCAACTGCCAGTATCAGGTTTCCTACGGCGACGGGTCGTTCACGTTCGGCGATTTCTCCTTGGAAACTCTCACGTTCCGACGAGCGCAAGTCCCGCGTGTGGCTCTCGGCTGCGGCCACGACAACGAGGGCCTCTTTGTGGGCGCCGCAGGTTTGTTGGGCCTAGGTCGCGGCGGGTTGTCGTTTCCAACCCAAGCCGGAACCCGATTCGACAACAAATTTTCGTACTGTTTAACTGACCGAACCGCTTCCACCAAACCGTCTTCGATTGTGTTTGGCGACTCGGCCGTTTCGCGAACCGCACGGTTCACTCCTATAATTATTAACCCTAAACTCGACACCTTTTATTATCTCGAGTTACTTGGCATCAGCGTTGGGGGGGCGCCGGTTCGAGGCATTTCGGCTTCGCTCTTTCGTCTCGACTCGACCGGGAATGGTGGAGTGATTATTGACTCGGGGACTTCCGTGACGCGCCTCACGCGACCTGCTTACGTGGCTCTTAGAGACGCCTTTCGGGTCGGAGCTTCGCATTTGAAACGCGCGCCCGAGTTCTCGCTTTTCGACACATGTTATGATCTTTCGGGGCTGCCGGAAGTTAAGGTTCCGACCGTGGTGTTGCATTTTCGCGGTGCTGATGTGTCGTTGCCGGCGGCGAATTACCTCATTCCGGTGGATAACAGCGGCAGATTCTGCTTTGCTTTCGCCGGAACAATGAGTGGGCTTTCTATCATTGGGAACATTCAACAGCAAGGATTTCGGGTTGTGTTTGATTTGGCGGGTTCTCGGGTAGGATTTGCCCCAAGAGGGTGCGCGTGA 945 0.5481 MSHAINYTQHKELSVEMNDFILSLPCSSPLCRRLDSPGCSRKSSNCQYQVSYGDGSFTFGDFSLETLTFRRAQVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPTQAGTRFDNKFSYCLTDRTASTKPSSIVFGDSAVSRTARFTPIIINPKLDTFYYLELLGISVGGAPVRGISASLFRLDSTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGASHLKRAPEFSLFDTCYDLSGLPEVKVPTVVLHFRGADVSLPAANYLIPVDNSGRFCFAFAGTMSGLSIIGNIQQQGFRVVFDLAGSRVGFAPRGCA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00531 314 SUPERFAMILY Acid proteases 23 313 IPR021109 -
Vian9g00531 314 Gene3D Acid Proteases 134 314 IPR021109 -
Vian9g00531 314 Pfam Xylanase inhibitor N-terminal 24 137 IPR032861 -
Vian9g00531 314 FunFam Aspartyl protease family protein 2 137 313 - -
Vian9g00531 314 PANTHER ASPARTYL PROTEASES 23 307 IPR001461 GO:0004190|GO:0006508
Vian9g00531 314 Pfam Xylanase inhibitor C-terminal 159 309 IPR032799 -
Vian9g00531 314 ProSiteProfiles Peptidase family A1 domain profile. 1 309 IPR033121 -
Vian9g00531 314 Gene3D Acid Proteases 6 133 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00531 Vian-Chr9 5902560 5904588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00531 23 313 Miscellaneous Gene Families AT1G77480 27.864 2.26e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00531 K22683 - gmx:100791511 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00531 9 5902560 5904588 Vian9g00531 9 5902560 5904588 ECH
Vian6g01063 6 27949674 27951098 Vian9g00531 9 5902560 5904588 PCT