Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01063 ATGGAAGGGAAGAACAAAACCACAAATGGCCTTCTCTTCCTGTCTCTCGCCCTCGCCCTCTCTCTCTCAGCCGCCGCAACCCTCCCATTCCAACTCCAAACCCAAACCTTAACTCTCCACTCCCTCCCCCACCCACCCACCCTCTCATGGCCCCAAGCCGAAGCCCTTGCAGAACCCGACCCGGATGATGCTCTCTCCCTTAACCTGCACCACATAGATGCACTCTCCTCCGATAAAACCCCGGAACAGCTCTTCCACCTCAGGCTCAAACGCGACGCCAAAAGAGTCGAATCCCTACTCACACTCGCAGCCCTCAACAGCAGCCACGCGCGCAGATCCGGCTCCGGTTTCAGCAGCTCCATCATATCCGGTCTGGCACAAGGAAGCGGCGAGTACTTCACCCGCATAGGCGTGGGTACTCCCGCTAGGTACGTCTACATGGTCTTGGACACCGGAAGTGACGTCGTTTGGCTCCAATGCGCCCCCTGCCGCAAATGCTATTCCCAAACCGACCCTGTTTTTGACCCCAGCAAATCCCGAACTTACGCCGGAATCCCCTGTGGAGCCCCTCTCTGCCGCAGGTTAGACTCTCCCGGCTGTAACAAGAACAAGGTTTGCCAGTACCAGGTTTCCTACGGCGACGGTTCCTTCACATTTGGAGATTTTTCCACCGAGACACTGACGTTTCGAAGGACAAGAGTCACCCGCGTCGCGCTCGGCTGTGGCCACGACAACGAAGGACTCTTCATAGGCGCTGCGGGTTTATTGGGGCTGGGCCGGGGTAGGTTATCTTTTCCTGTCCAGACAGGACGCCGGTTCAACCAGAAGTTCTCTTACTGCCTGGTGGACCGTTCAGCCTCGGCCAAACCATCCTCCGTTGTCTTCGGAGATTCCGCTGTTTCCCGAACCGCGCGGTTCACTCCTCTCCTCAAGAACCCCAAGCTCGATACCTTCTATTACGTGGAGCTCCTCGGGATCAGTGTTGGTGGCGCGCCGGTGCGCGGCTTATCCGCCTCGCTATTCCGCCTAGACTCTGCCGGTAACGGCGGAGTCATCATCGACTCCGGCACGTCCGTCACCCGCTTGACCCGACCCGCTTACATTGCTCTCCGGGACGCGTTCCGCGTCGGAGCCTCGCGCCTGAAGCGAGCACCGGAGTTCTCGCTCTTCGACACGTGTTTCGATCTGTCTGGGCTCACAGAAGTGAAAGTGCCGACTGTGGTGCTGCATTTCCGCGGTGCCGACGTGTCACTACCGGCGACGAATTACTTGATTCCAGTGGATAATAGCGGGAGCTTCTGCTTCGCATTTGCTGGAACCATGAGCGGTTTGTCCATAATCGGTAACATACAGCAACAAGGATTCCGGGTATCATACGACCTGGCGAGTTCTCGGGTCGGGTTTGCTCCGAGAGGTTGCGTTTGA 1425 0.5782 MEGKNKTTNGLLFLSLALALSLSAAATLPFQLQTQTLTLHSLPHPPTLSWPQAEALAEPDPDDALSLNLHHIDALSSDKTPEQLFHLRLKRDAKRVESLLTLAALNSSHARRSGSGFSSSIISGLAQGSGEYFTRIGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYSQTDPVFDPSKSRTYAGIPCGAPLCRRLDSPGCNKNKVCQYQVSYGDGSFTFGDFSTETLTFRRTRVTRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSAVSRTARFTPLLKNPKLDTFYYVELLGISVGGAPVRGLSASLFRLDSAGNGGVIIDSGTSVTRLTRPAYIALRDAFRVGASRLKRAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSYDLASSRVGFAPRGCV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01063 474 CDD cnd41_like 131 473 IPR033873 -
Vian6g01063 474 FunFam aspartyl protease family protein 2 109 295 - -
Vian6g01063 474 FunFam Aspartyl protease family protein 2 297 473 - -
Vian6g01063 474 Gene3D Acid Proteases 295 474 IPR021109 -
Vian6g01063 474 Gene3D Acid Proteases 110 294 IPR021109 -
Vian6g01063 474 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 147 158 IPR001969 GO:0004190|GO:0006508
Vian6g01063 474 PANTHER ASPARTYL PROTEASES 14 467 IPR001461 GO:0004190|GO:0006508
Vian6g01063 474 Pfam Xylanase inhibitor C-terminal 319 469 IPR032799 -
Vian6g01063 474 Pfam Xylanase inhibitor N-terminal 132 297 IPR032861 -
Vian6g01063 474 ProSiteProfiles Peptidase family A1 domain profile. 132 469 IPR033121 -
Vian6g01063 474 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 351 362 IPR001969 GO:0004190|GO:0006508
Vian6g01063 474 SUPERFAMILY Acid proteases 125 473 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01063 Vian-Chr6 27949674 27951098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01063 107 473 Miscellaneous Gene Families AT1G77480 26.980 1.25e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01063 K22683 - gmx:100794269 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01063 6 27949674 27951098 Vian9g00531 9 5902560 5904588 PCT